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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170318425
CESQ01042137
218119
Alphaproteobacteria
>WENV170319563
CESQ01175232
452894
Alphaproteobacteria
CCA
Trp
>WENV170318612
CESQ01062026
272979
Alphaproteobacteria
GAT
Ile
>WENV170319142
CESQ01121083
780039
Alphaproteobacteria
GCA
Cys
>WENV170318580
CESQ01059733
655623
Alphaproteobacteria
GCC
Gly
>WENV170318637
CESQ01065056
656001
Alphaproteobacteria
GCC
Gly
>WENV170319761
CESQ01196602
655171
Alphaproteobacteria
GGT
Thr
>WENV170318726
CESQ01072998
779596
Alphaproteobacteria
TCC
Gly
>WENV170319433
CESQ01154987
273603
Alphaproteobacteria
TGG
Pro
>WENV170319508
CESQ01166039
655358
Alphaproteobacteria
TTG
Gln
>WENV170319716
CESQ01192174
454059
Alphaproteobacteria
TTT
Lys
>WENV170319581
CESQ01177753
454914
Alphaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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