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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170717053
LSQX01022679
482113
Firmicutes
TGG
Pro
>WENV170723665
LSQX01277629
653715
Firmicutes
GCC
Gly
>WENV170725600
LSQX01348956
298552
Firmicutes
GAC
Val
>WENV170717382
LSQX01033811
658827
Firmicutes
TTC
Glu
>WENV170718759
LSQX01089795
658827
Firmicutes
TTC
Glu
>WENV170723806
LSQX01282197
658827
Firmicutes
TTC
Glu
>WENV170727211
LSQX01408868
658827
Firmicutes
TTC
Glu
>WENV170720572
LSQX01157830
270726
Firmicutes
GTC
Asp
>WENV170725144
LSQX01332145
654056
Firmicutes
CCC
Gly
>WENV170726099
LSQX01367712
654056
Firmicutes
CCC
Gly
>WENV170724256
LSQX01298611
297724
Firmicutes
TGG
Pro
>WENV170717150
LSQX01025737
297726
Firmicutes
CAT
Met
>WENV170723821
LSQX01282691
297726
Firmicutes
CAT
Met
>WENV170721430
LSQX01190164
456803
Firmicutes
TTC
Glu
>WENV170725377
LSQX01340646
274113
Firmicutes
GTC
Asp
>WENV170718311
LSQX01070325
653855
Firmicutes
GTT
Asn
>WENV170726281
LSQX01373847
653855
Firmicutes
GTT
Asn
>WENV170720920
LSQX01171409
285831
Firmicutes
GTC
Asp
>WENV170721047
LSQX01177266
285831
Firmicutes
GTC
Asp
>WENV170723124
LSQX01255753
285831
Firmicutes
GTC
Asp
>WENV170718572
LSQX01082104
451367
Firmicutes
TAC
Val
>WENV170726879
LSQX01396881
451367
Firmicutes
TAC
Val
>WENV170722834
LSQX01245194
676460
Firmicutes
GTT
Asn
>WENV170723422
LSQX01267795
658613
Firmicutes
GCC
Gly
>WENV170719865
LSQX01131711
298549
Firmicutes
GAT
Ile
>WENV170718849
LSQX01092610
658551
Firmicutes
GCC
Gly
>WENV170718865
LSQX01093084
658551
Firmicutes
GCC
Gly
>WENV170719205
LSQX01105261
658551
Firmicutes
GCC
Gly
>WENV170719883
LSQX01132819
658551
Firmicutes
GCC
Gly
>WENV170719935
LSQX01134088
658551
Firmicutes
GCC
Gly
>WENV170720805
LSQX01167125
658551
Firmicutes
GCC
Gly
>WENV170721545
LSQX01194284
658551
Firmicutes
GCC
Gly
>WENV170721754
LSQX01202878
658551
Firmicutes
GCC
Gly
>WENV170722932
LSQX01249159
658551
Firmicutes
GCC
Gly
>WENV170724198
LSQX01296591
658551
Firmicutes
GCC
Gly
>WENV170726089
LSQX01367474
658551
Firmicutes
GCC
Gly
>WENV170726157
LSQX01369442
658551
Firmicutes
GCC
Gly
>WENV170726455
LSQX01381020
658551
Firmicutes
GCC
Gly
>WENV170727150
LSQX01406211
658733
Firmicutes
GCC
Gly
>WENV170717029
LSQX01021348
74574
Firmicutes
CGA
Ser
>WENV170719824
LSQX01130182
482111
Firmicutes
GTT
Asn
>WENV170725159
LSQX01332655
482111
Firmicutes
GTT
Asn
>WENV170720159
LSQX01143440
789651
Firmicutes
TCC
Gly
>WENV170723691
LSQX01278313
789651
Firmicutes
TCC
Gly
>WENV170726785
LSQX01394243
789651
Firmicutes
TCC
Gly
>WENV170719877
LSQX01132275
275568
Firmicutes
GTC
Asp
>WENV170716786
LSQX01011570
462970
Firmicutes
CCA
Trp
>WENV170722763
LSQX01242205
279706
Firmicutes
GAT
Ile
>WENV170719562
LSQX01118439
275589
Firmicutes
CAT
Met
>WENV170725160
LSQX01332655
275589
Firmicutes
CAT
Met
>WENV170725260
LSQX01336615
275589
Firmicutes
CAT
Met
>WENV170724128
LSQX01294381
452394
Firmicutes
TGC
Ala
>WENV170718325
LSQX01071241
461574
Firmicutes
TGT
Thr
>WENV170718661
LSQX01085916
671191
Firmicutes
GCC
Gly
>WENV170721201
LSQX01182506
671191
Firmicutes
GCC
Gly
>WENV170717151
LSQX01025737
74575
Firmicutes
TGA
Ser
>WENV170721310
LSQX01185378
271483
Firmicutes
CAT
Met
>WENV170722475
LSQX01230776
271483
Firmicutes
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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