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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170760703
LUMU01000003
30553
Alphaproteobacteria
GGA
Ser
>WENV170760706
LUMU01000005
274224
Alphaproteobacteria
CAT
Met
>WENV170760708
LUMU01000005
277664
Alphaproteobacteria
GTC
Asp
>WENV170760710
LUMU01000005
281027
Alphaproteobacteria
CCT
Arg
>WENV170760728
LUMU01000010
454512
Alphaproteobacteria
CCA
Trp
>WENV170760730
LUMU01000010
655361
Alphaproteobacteria
GCC
Gly
>WENV170760733
LUMU01000013
455360
Alphaproteobacteria
CGC
Ala
>WENV170760738
LUMU01000019
454504
Alphaproteobacteria
CAT
Met
>WENV170760740
LUMU01000019
455172
Alphaproteobacteria
GGC
Ala
>WENV170760742
LUMU01000036
655363
Alphaproteobacteria
GGT
Thr
>WENV170760744
LUMU01000037
780039
Alphaproteobacteria
GCA
Cys
>WENV170760954
LUMU01002173
275843
Alphaproteobacteria
CCT
Arg
>WENV170760957
LUMU01002235
304024
Alphaproteobacteria
GAT
Ile
>WENV170761024
LUMU01004594
653534
Alphaproteobacteria
GCC
Gly
>WENV170761074
LUMU01007269
275153
Alphaproteobacteria
CGG
Pro
>WENV170761125
LUMU01010158
270792
Alphaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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