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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170762369
LUMW01006574
275828
Alphaproteobacteria
GTC
Asp
>WENV170762370
LUMW01006574
275828
Alphaproteobacteria
GTC
Asp
>WENV170762227
LUMW01002550
273797
Alphaproteobacteria
GGG
Pro
>WENV170762343
LUMW01005845
452917
Alphaproteobacteria
TAC
Val
>WENV170762272
LUMW01003761
655167
Alphaproteobacteria
TTC
Glu
>WENV170762535
LUMW01013393
655167
Alphaproteobacteria
TTC
Glu
>WENV170762243
LUMW01002966
457318
Alphaproteobacteria
CGT
Thr
>WENV170762302
LUMW01004372
273805
Alphaproteobacteria
ACG
Arg
>WENV170762426
LUMW01008125
46070
Alphaproteobacteria
CGA
Ser
>WENV170762198
LUMW01002062
653534
Alphaproteobacteria
GCC
Gly
>WENV170762424
LUMW01008098
653534
Alphaproteobacteria
GCC
Gly
>WENV170762715
LUMW01030434
653534
Alphaproteobacteria
GCC
Gly
>WENV170762539
LUMW01013565
45799
Alphaproteobacteria
GCT
Ser
>WENV170762014
LUMW01000449
30553
Alphaproteobacteria
GGA
Ser
>WENV170762416
LUMW01007703
291540
Alphaproteobacteria
TGG
Pro
>WENV170762468
LUMW01010240
653538
Alphaproteobacteria
TTC
Glu
>WENV170762437
LUMW01008529
45981
Alphaproteobacteria
TGA
Ser
>WENV170762087
LUMW01000796
277664
Alphaproteobacteria
GTC
Asp
>WENV170762293
LUMW01004173
661003
Alphaproteobacteria
GAA
Phe
>WENV170762767
LUMW01036567
656297
Alphaproteobacteria
TTG
Gln
>WENV170762699
LUMW01028063
780661
Alphaproteobacteria
GCA
Cys
>WENV170761978
LUMW01000279
274224
Alphaproteobacteria
CAT
Met
>WENV170762354
LUMW01006184
655359
Alphaproteobacteria
GAC
Val
>WENV170762286
LUMW01004063
154065
Alphaproteobacteria
GAG
Leu
>WENV170761956
LUMW01000204
655363
Alphaproteobacteria
GGT
Thr
>WENV170762587
LUMW01016878
459032
Alphaproteobacteria
CCA
Trp
>WENV170762673
LUMW01023635
274039
Alphaproteobacteria
CAT
Met
>WENV170762140
LUMW01001231
455172
Alphaproteobacteria
GGC
Ala
>WENV170762748
LUMW01034037
655300
Alphaproteobacteria
GTT
Asn
>WENV170762429
LUMW01008215
113204
Alphaproteobacteria
GAG
Leu
>WENV170762052
LUMW01000596
455360
Alphaproteobacteria
CGC
Ala
>WENV170762792
LUMW01040416
275157
Alphaproteobacteria
TGG
Pro
>WENV170762472
LUMW01010384
270796
Alphaproteobacteria
GTC
Asp
>WENV170762473
LUMW01010384
270796
Alphaproteobacteria
GTC
Asp
>WENV170762696
LUMW01027410
270796
Alphaproteobacteria
GTC
Asp
>WENV170762263
LUMW01003594
655361
Alphaproteobacteria
GCC
Gly
>WENV170762438
LUMW01008638
154064
Alphaproteobacteria
CAG
Leu
>WENV170762150
LUMW01001377
454504
Alphaproteobacteria
CAT
Met
>WENV170762359
LUMW01006494
218137
Alphaproteobacteria
TAG
Leu
>WENV170762233
LUMW01002683
671670
Alphaproteobacteria
CAC
Val
>WENV170761995
LUMW01000349
281027
Alphaproteobacteria
CCT
Arg
>WENV170762592
LUMW01017226
780298
Alphaproteobacteria
CTG
Gln
>WENV170762287
LUMW01004064
454914
Alphaproteobacteria
TTT
Lys
>WENV170761885
LUMW01000049
112839
Alphaproteobacteria
CAG
Leu
>WENV170762624
LUMW01019449
275152
Alphaproteobacteria
TCT
Arg
>WENV170762547
LUMW01014248
46034
Alphaproteobacteria
CGA
Ser
>WENV170762695
LUMW01027227
46034
Alphaproteobacteria
CGA
Ser
>WENV170762239
LUMW01002801
654103
Alphaproteobacteria
GAA
Phe
>WENV170761938
LUMW01000138
780039
Alphaproteobacteria
GCA
Cys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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