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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170816533
MDSX01032022
275457
Gammaproteobacteria
ACG
Arg
>WENV170818861
MDSX01081005
457453
Gammaproteobacteria
TTT
Lys
>WENV170818862
MDSX01081005
457453
Gammaproteobacteria
TTT
Lys
>WENV170819380
MDSX01091358
278579
Gammaproteobacteria
GTC
Asp
>WENV170819382
MDSX01091358
278579
Gammaproteobacteria
GTC
Asp
>WENV170819384
MDSX01091358
278579
Gammaproteobacteria
GTC
Asp
>WENV170817586
MDSX01053408
271464
Gammaproteobacteria
TGG
Pro
>WENV170818456
MDSX01072049
271464
Gammaproteobacteria
TGG
Pro
>WENV170818787
MDSX01079022
278942
Gammaproteobacteria
CCG
Arg
>WENV170815420
MDSX01009789
112813
Gammaproteobacteria
CAG
Leu
>WENV170816297
MDSX01028027
456706
Gammaproteobacteria
TGT
Thr
>WENV170816070
MDSX01023304
456706
Gammaproteobacteria
TGT
Thr
>WENV170816119
MDSX01024012
276974
Gammaproteobacteria
GGG
Pro
>WENV170815209
MDSX01006283
276974
Gammaproteobacteria
GGG
Pro
>WENV170817122
MDSX01044152
456247
Gammaproteobacteria
CCA
Trp
>WENV170815558
MDSX01012323
458351
Gammaproteobacteria
TTG
Gln
>WENV170819996
MDSX01103704
30865
Gammaproteobacteria
GCT
Ser
>WENV170819997
MDSX01103704
276971
Gammaproteobacteria
ACG
Arg
>WENV170815196
MDSX01006046
276971
Gammaproteobacteria
ACG
Arg
>WENV170815195
MDSX01006046
276971
Gammaproteobacteria
ACG
Arg
>WENV170816378
MDSX01029575
457171
Gammaproteobacteria
GTT
Asn
>WENV170816261
MDSX01027271
274864
Gammaproteobacteria
ACG
Arg
>WENV170818974
MDSX01083135
276976
Gammaproteobacteria
TCT
Arg
>WENV170818864
MDSX01081005
278155
Gammaproteobacteria
TGG
Pro
>WENV170817725
MDSX01055937
278155
Gammaproteobacteria
TGG
Pro
>WENV170818767
MDSX01078512
273122
Gammaproteobacteria
CAT
Met
>WENV170818768
MDSX01078512
273122
Gammaproteobacteria
CAT
Met
>WENV170816526
MDSX01031963
273749
Gammaproteobacteria
CCA
Trp
>WENV170817422
MDSX01050000
276973
Gammaproteobacteria
GAC
Val
>WENV170817830
MDSX01057689
452332
Gammaproteobacteria
GTG
His
>WENV170819449
MDSX01092888
278982
Gammaproteobacteria
CCG
Arg
>WENV170819437
MDSX01092726
278982
Gammaproteobacteria
CCG
Arg
>WENV170815463
MDSX01010652
278982
Gammaproteobacteria
CCG
Arg
>WENV170819724
MDSX01097938
275658
Gammaproteobacteria
TGG
Pro
>WENV170817728
MDSX01055937
274148
Gammaproteobacteria
GTC
Asp
>WENV170816162
MDSX01024901
273754
Gammaproteobacteria
GTT
Asn
>WENV170816163
MDSX01024901
273754
Gammaproteobacteria
GTT
Asn
>WENV170817842
MDSX01057808
459731
Gammaproteobacteria
GGT
Thr
>WENV170816115
MDSX01023921
459731
Gammaproteobacteria
GGT
Thr
>WENV170817218
MDSX01045951
113485
Gammaproteobacteria
CAA
Leu
>WENV170819281
MDSX01089668
452881
Gammaproteobacteria
TGT
Thr
>WENV170816084
MDSX01023454
452881
Gammaproteobacteria
TGT
Thr
>WENV170817411
MDSX01049811
271286
Gammaproteobacteria
CAT
Met
>WENV170818972
MDSX01083087
459319
Gammaproteobacteria
GAA
Phe
>WENV170817412
MDSX01049811
181084
Gammaproteobacteria
TAG
Leu
>WENV170818608
MDSX01075199
112814
Gammaproteobacteria
GAG
Leu
>WENV170819247
MDSX01088900
276970
Gammaproteobacteria
CCG
Arg
>WENV170815295
MDSX01007712
276975
Gammaproteobacteria
TGG
Pro
>WENV170818973
MDSX01083135
276975
Gammaproteobacteria
TGG
Pro
>WENV170816601
MDSX01033326
655194
Gammaproteobacteria
GGT
Thr
>WENV170815952
MDSX01020522
456267
Gammaproteobacteria
GAA
Phe
>WENV170820111
MDSX01106128
275485
Gammaproteobacteria
GTC
Asp
>WENV170818609
MDSX01075199
271253
Gammaproteobacteria
CAT
Met
>WENV170819936
MDSX01102278
271253
Gammaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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