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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170117547
CENJ01016561
364406
Alphaproteobacteria
GCC
Gly
>WENV170118364
CENJ01061450
149985
Alphaproteobacteria
ACG
Arg
>WENV170117440
CENJ01011910
80917
Alphaproteobacteria
CAG
Leu
>WENV170119372
CENJ01136105
267922
Alphaproteobacteria
CCA
Trp
>WENV170119196
CENJ01119893
241021
Alphaproteobacteria
GGC
Ala
>WENV170118579
CENJ01074944
113700
Alphaproteobacteria
>WENV170118677
CENJ01082163
113700
Alphaproteobacteria
>WENV170118137
CENJ01047077
144964
Alphaproteobacteria
TGG
Pro
>WENV170118624
CENJ01078029
144964
Alphaproteobacteria
TGG
Pro
>WENV170119427
CENJ01141279
144964
Alphaproteobacteria
TGG
Pro
>WENV170119801
CENJ01164708
144964
Alphaproteobacteria
TGG
Pro
>WENV170117424
CENJ01011269
159305
Alphaproteobacteria
GTC
Asp
>WENV170118351
CENJ01060804
159305
Alphaproteobacteria
GTC
Asp
>WENV170119210
CENJ01120590
176908
Alphaproteobacteria
GTC
Asp
>WENV170117694
CENJ01024465
338282
Alphaproteobacteria
GTT
Asn
>WENV170117590
CENJ01018499
339723
Alphaproteobacteria
>WENV170118933
CENJ01099842
254188
Alphaproteobacteria
CCA
Trp
>WENV170117473
CENJ01012923
340288
Alphaproteobacteria
GCC
Gly
>WENV170117727
CENJ01026194
340288
Alphaproteobacteria
GCC
Gly
>WENV170117731
CENJ01026612
345376
Alphaproteobacteria
GAC
Val
>WENV170118359
CENJ01061049
345376
Alphaproteobacteria
GAC
Val
>WENV170119198
CENJ01119969
157999
Alphaproteobacteria
TCT
Arg
>WENV170118516
CENJ01071111
159395
Alphaproteobacteria
GTC
Asp
>WENV170118473
CENJ01068394
148158
Alphaproteobacteria
ACG
Arg
>WENV170118070
CENJ01044073
252148
Alphaproteobacteria
TGT
Thr
>WENV170118519
CENJ01071286
252148
Alphaproteobacteria
TGT
Thr
>WENV170118743
CENJ01086517
342876
Alphaproteobacteria
GAC
Val
>WENV170117879
CENJ01034945
23672
Alphaproteobacteria
GCT
Ser
>WENV170117572
CENJ01017503
167926
Alphaproteobacteria
CAT
Met
>WENV170117811
CENJ01031165
167926
Alphaproteobacteria
CAT
Met
>WENV170118069
CENJ01044035
167926
Alphaproteobacteria
CAT
Met
>WENV170118118
CENJ01045704
167926
Alphaproteobacteria
CAT
Met
>WENV170118206
CENJ01051035
167926
Alphaproteobacteria
CAT
Met
>WENV170119129
CENJ01114527
167926
Alphaproteobacteria
CAT
Met
>WENV170118151
CENJ01047611
161002
Alphaproteobacteria
GTG
His
>WENV170119132
CENJ01114744
341164
Alphaproteobacteria
GCC
Gly
>WENV170117795
CENJ01029819
59164
Alphaproteobacteria
GAG
Leu
>WENV170117493
CENJ01013606
242540
Alphaproteobacteria
TGC
Ala
>WENV170117987
CENJ01040409
359842
Alphaproteobacteria
GAC
Val
>WENV170117802
CENJ01030302
348781
Alphaproteobacteria
GAA
Phe
>WENV170119587
CENJ01153111
348781
Alphaproteobacteria
GAA
Phe
>WENV170119920
CENJ01170169
348781
Alphaproteobacteria
GAA
Phe
>WENV170118115
CENJ01045548
163860
Alphaproteobacteria
GGG
Pro
>WENV170118802
CENJ01090177
412477
Alphaproteobacteria
GCA
Cys
>WENV170120411
CENJ01309652
147283
Alphaproteobacteria
GTG
His
>WENV170117340
CENJ01006893
338288
Alphaproteobacteria
TTC
Glu
>WENV170118126
CENJ01046751
160158
Alphaproteobacteria
GAT
Ile
>WENV170119145
CENJ01116040
412424
Alphaproteobacteria
TCC
Gly
>WENV170119455
CENJ01143810
113715
Alphaproteobacteria
TAG
Leu
>WENV170119081
CENJ01110564
150356
Alphaproteobacteria
GTC
Asp
>WENV170119286
CENJ01129399
268598
Alphaproteobacteria
GAA
Phe
>WENV170118646
CENJ01079971
351007
Alphaproteobacteria
TTC
Glu
>WENV170119884
CENJ01168646
351007
Alphaproteobacteria
TTC
Glu
>WENV170119489
CENJ01146817
236256
Alphaproteobacteria
TAC
Val
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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