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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170167875
CEOP01044655
364406
Alphaproteobacteria
GCC
Gly
>WENV170168576
CEOP01104008
365250
Alphaproteobacteria
GCC
Gly
>WENV170167572
CEOP01021399
306070
Alphaproteobacteria
CCA
Trp
>WENV170168575
CEOP01104008
306070
Alphaproteobacteria
CCA
Trp
>WENV170169196
CEOP01171731
306070
Alphaproteobacteria
CCA
Trp
>WENV170168622
CEOP01107941
176908
Alphaproteobacteria
GTC
Asp
>WENV170169580
CEOP01218553
338282
Alphaproteobacteria
GTT
Asn
>WENV170169809
CEOP01239494
339454
Alphaproteobacteria
>WENV170168367
CEOP01082826
276379
Alphaproteobacteria
TGC
Ala
>WENV170169804
CEOP01238836
294226
Alphaproteobacteria
>WENV170168071
CEOP01058659
23672
Alphaproteobacteria
GCT
Ser
>WENV170169176
CEOP01169360
161002
Alphaproteobacteria
GTG
His
>WENV170169175
CEOP01169201
368915
Alphaproteobacteria
GGT
Thr
>WENV170169130
CEOP01163209
412477
Alphaproteobacteria
GCA
Cys
>WENV170168210
CEOP01070278
369678
Alphaproteobacteria
GGT
Thr
>WENV170168236
CEOP01071651
412424
Alphaproteobacteria
TCC
Gly
>WENV170168947
CEOP01141388
412424
Alphaproteobacteria
TCC
Gly
>WENV170168950
CEOP01141842
412424
Alphaproteobacteria
TCC
Gly
>WENV170169027
CEOP01151509
268598
Alphaproteobacteria
GAA
Phe
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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