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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170209295
CEPV01047681
364406
Alphaproteobacteria
GCC
Gly
>WENV170209028
CEPV01028069
203131
Alphaproteobacteria
CCG
Arg
>WENV170210172
CEPV01145889
10665
Alphaproteobacteria
GCT
Ser
>WENV170209054
CEPV01029605
66752
Alphaproteobacteria
CAG
Leu
>WENV170209453
CEPV01060153
66752
Alphaproteobacteria
CAG
Leu
>WENV170209224
CEPV01042168
339724
Alphaproteobacteria
TTG
Gln
>WENV170210336
CEPV01190808
95928
Alphaproteobacteria
TAG
Leu
>WENV170208493
CEPV01000857
200119
Alphaproteobacteria
CAT
Met
>WENV170209069
CEPV01030914
339725
Alphaproteobacteria
GAA
Phe
>WENV170208651
CEPV01008625
192195
Alphaproteobacteria
GTC
Asp
>WENV170209594
CEPV01073073
412281
Alphaproteobacteria
CTG
Gln
>WENV170209142
CEPV01036027
369678
Alphaproteobacteria
GGT
Thr
>WENV170209863
CEPV01090469
147289
Alphaproteobacteria
GTC
Asp
>WENV170210257
CEPV01171155
21074
Alphaproteobacteria
GGA
Ser
>WENV170209251
CEPV01044045
191695
Alphaproteobacteria
CCT
Arg
>WENV170209349
CEPV01051115
193837
Alphaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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