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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170213424
CEPX01028967
318887
Gammaproteobacteria
GCC
Gly
>WENV170213006
CEPX01004327
147048
Gammaproteobacteria
CCA
Trp
>WENV170213597
CEPX01039623
235450
Gammaproteobacteria
GTG
His
>WENV170213657
CEPX01043431
113631
Gammaproteobacteria
GTA
Tyr
>WENV170213172
CEPX01013735
145489
Gammaproteobacteria
GAT
Ile
>WENV170215191
CEPX01134841
113619
Gammaproteobacteria
>WENV170213426
CEPX01028967
59177
Gammaproteobacteria
TAA
Leu
>WENV170214476
CEPX01088468
59177
Gammaproteobacteria
TAA
Leu
>WENV170212941
CEPX01001674
301997
Gammaproteobacteria
TTC
Glu
>WENV170213085
CEPX01009950
185163
Gammaproteobacteria
ACG
Arg
>WENV170213792
CEPX01050479
114020
Gammaproteobacteria
GTA
Tyr
>WENV170214297
CEPX01076268
114020
Gammaproteobacteria
GTA
Tyr
>WENV170213658
CEPX01043431
338534
Gammaproteobacteria
TCC
Gly
>WENV170213089
CEPX01010118
147778
Gammaproteobacteria
GGG
Pro
>WENV170213425
CEPX01028967
435350
Gammaproteobacteria
GCA
Cys
>WENV170214298
CEPX01076268
341109
Gammaproteobacteria
TCC
Gly
>WENV170216296
CEPX01195178
145261
Gammaproteobacteria
CAT
Met
>WENV170214555
CEPX01092920
145366
Gammaproteobacteria
ACG
Arg
>WENV170213179
CEPX01014303
238511
Gammaproteobacteria
TTT
Lys
>WENV170214475
CEPX01088468
412799
Gammaproteobacteria
GCA
Cys
>WENV170213745
CEPX01047893
340801
Gammaproteobacteria
CCT
Arg
>WENV170216564
CEPX01201738
52727
Gammaproteobacteria
GGA
Ser
>WENV170213103
CEPX01010714
189955
Gammaproteobacteria
GAT
Ile
>WENV170215650
CEPX01169673
309581
Gammaproteobacteria
GAA
Phe
>WENV170214308
CEPX01076797
147055
Gammaproteobacteria
TGG
Pro
>WENV170213173
CEPX01013735
236029
Gammaproteobacteria
TGC
Ala
>WENV170213596
CEPX01039623
147022
Gammaproteobacteria
CCG
Arg
>WENV170213042
CEPX01007252
151889
Gammaproteobacteria
CAT
Met
>WENV170213087
CEPX01010008
151889
Gammaproteobacteria
CAT
Met
>WENV170214275
CEPX01075001
151889
Gammaproteobacteria
CAT
Met
>WENV170214543
CEPX01092192
243485
Gammaproteobacteria
TGT
Thr
>WENV170213590
CEPX01039544
146807
Gammaproteobacteria
TCT
Arg
>WENV170213699
CEPX01044980
293332
Gammaproteobacteria
GAA
Phe
>WENV170217125
CEPX01349162
147120
Gammaproteobacteria
CGG
Pro
>WENV170213964
CEPX01060138
23669
Gammaproteobacteria
GCT
Ser
>WENV170214112
CEPX01066094
149037
Gammaproteobacteria
GAC
Val
>WENV170214237
CEPX01071676
149037
Gammaproteobacteria
GAC
Val
>WENV170214287
CEPX01075387
147117
Gammaproteobacteria
GTC
Asp
>WENV170217211
CEPX01363926
147112
Gammaproteobacteria
GGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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