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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170221828
CEQC01015168
421153
Alphaproteobacteria
>WENV170221769
CEQC01006969
96061
Alphaproteobacteria
CAA
Leu
>WENV170221744
CEQC01005274
74116
Alphaproteobacteria
CAG
Leu
>WENV170222017
CEQC01067998
160251
Alphaproteobacteria
CAT
Met
>WENV170221774
CEQC01007848
237493
Alphaproteobacteria
CCA
Trp
>WENV170221938
CEQC01033683
254188
Alphaproteobacteria
CCA
Trp
>WENV170221745
CEQC01005293
296307
Alphaproteobacteria
CCA
Trp
>WENV170221757
CEQC01006325
185767
Alphaproteobacteria
CCG
Arg
>WENV170221758
CEQC01006579
191695
Alphaproteobacteria
CCT
Arg
>WENV170221762
CEQC01006817
191695
Alphaproteobacteria
CCT
Arg
>WENV170221822
CEQC01013808
258175
Alphaproteobacteria
CGC
Ala
>WENV170221754
CEQC01006183
412281
Alphaproteobacteria
CTG
Gln
>WENV170221711
CEQC01003309
244489
Alphaproteobacteria
CTT
Lys
>WENV170221674
CEQC01000067
339725
Alphaproteobacteria
GAA
Phe
>WENV170221701
CEQC01002646
339725
Alphaproteobacteria
GAA
Phe
>WENV170221917
CEQC01029008
339725
Alphaproteobacteria
GAA
Phe
>WENV170221901
CEQC01027224
58865
Alphaproteobacteria
GAG
Leu
>WENV170221830
CEQC01015416
340106
Alphaproteobacteria
GCC
Gly
>WENV170221906
CEQC01027448
377327
Alphaproteobacteria
GCC
Gly
>WENV170221770
CEQC01007129
10665
Alphaproteobacteria
GCT
Ser
>WENV170221841
CEQC01017168
21074
Alphaproteobacteria
GGA
Ser
>WENV170221891
CEQC01025961
151733
Alphaproteobacteria
GGG
Pro
>WENV170221972
CEQC01037593
339750
Alphaproteobacteria
GGT
Thr
>WENV170221879
CEQC01023171
339305
Alphaproteobacteria
GGT
Thr
>WENV170221735
CEQC01004601
369678
Alphaproteobacteria
GGT
Thr
>WENV170221772
CEQC01007633
162801
Alphaproteobacteria
GTG
His
>WENV170221710
CEQC01003258
162801
Alphaproteobacteria
GTG
His
>WENV170221792
CEQC01009914
80837
Alphaproteobacteria
TAA
Leu
>WENV170221957
CEQC01036001
235496
Alphaproteobacteria
TAC
Val
>WENV170222020
CEQC01071042
193550
Alphaproteobacteria
TCT
Arg
>WENV170221900
CEQC01027187
150194
Alphaproteobacteria
TCT
Arg
>WENV170221705
CEQC01003047
339724
Alphaproteobacteria
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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