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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170231707
CEQH01267721
58865
Alphaproteobacteria
GAG
Leu
>WENV170230700
CEQH01065889
66752
Alphaproteobacteria
CAG
Leu
>WENV170231275
CEQH01141179
339724
Alphaproteobacteria
TTG
Gln
>WENV170230475
CEQH01039636
421153
Alphaproteobacteria
>WENV170230617
CEQH01054514
421153
Alphaproteobacteria
>WENV170231832
CEQH01284529
190043
Alphaproteobacteria
CAT
Met
>WENV170231217
CEQH01135737
147577
Alphaproteobacteria
CCG
Arg
>WENV170230314
CEQH01023058
199865
Alphaproteobacteria
CAT
Met
>WENV170230682
CEQH01063163
185767
Alphaproteobacteria
CCG
Arg
>WENV170231280
CEQH01142016
162801
Alphaproteobacteria
GTG
His
>WENV170231206
CEQH01134313
236134
Alphaproteobacteria
TAC
Val
>WENV170231138
CEQH01126467
383873
Alphaproteobacteria
>WENV170230859
CEQH01087918
235492
Alphaproteobacteria
GAA
Phe
>WENV170231016
CEQH01110293
235496
Alphaproteobacteria
TAC
Val
>WENV170231085
CEQH01119945
244489
Alphaproteobacteria
CTT
Lys
>WENV170230390
CEQH01031039
339725
Alphaproteobacteria
GAA
Phe
>WENV170230426
CEQH01034453
258175
Alphaproteobacteria
CGC
Ala
>WENV170230334
CEQH01024640
167926
Alphaproteobacteria
CAT
Met
>WENV170230592
CEQH01051595
167926
Alphaproteobacteria
CAT
Met
>WENV170231635
CEQH01248957
254522
Alphaproteobacteria
GAA
Phe
>WENV170231794
CEQH01281116
339305
Alphaproteobacteria
GGT
Thr
>WENV170231297
CEQH01144213
75256
Alphaproteobacteria
CAG
Leu
>WENV170231639
CEQH01249588
10657
Alphaproteobacteria
GCT
Ser
>WENV170231666
CEQH01259873
80837
Alphaproteobacteria
TAA
Leu
>WENV170230912
CEQH01095991
338622
Alphaproteobacteria
GTT
Asn
>WENV170231034
CEQH01112653
432316
Alphaproteobacteria
GCA
Cys
>WENV170231584
CEQH01231496
96322
Alphaproteobacteria
CAA
Leu
>WENV170231197
CEQH01133082
412281
Alphaproteobacteria
CTG
Gln
>WENV170231312
CEQH01146789
369678
Alphaproteobacteria
GGT
Thr
>WENV170230414
CEQH01033459
150194
Alphaproteobacteria
TCT
Arg
>WENV170230091
CEQH01002593
21074
Alphaproteobacteria
GGA
Ser
>WENV170230285
CEQH01019962
377327
Alphaproteobacteria
GCC
Gly
>WENV170230442
CEQH01036393
377327
Alphaproteobacteria
GCC
Gly
>WENV170230572
CEQH01049860
23572
Alphaproteobacteria
TGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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