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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170245812
CEQP01128598
80917
Alphaproteobacteria
CAG
Leu
>WENV170246429
CEQP01176517
113700
Alphaproteobacteria
>WENV170245225
CEQP01079376
421153
Alphaproteobacteria
>WENV170245967
CEQP01141078
199865
Alphaproteobacteria
CAT
Met
>WENV170246582
CEQP01256520
162801
Alphaproteobacteria
GTG
His
>WENV170245929
CEQP01138333
74116
Alphaproteobacteria
CAG
Leu
>WENV170244580
CEQP01030906
283763
Alphaproteobacteria
TGC
Ala
>WENV170245953
CEQP01140207
412279
Alphaproteobacteria
CCC
Gly
>WENV170245760
CEQP01122705
339725
Alphaproteobacteria
GAA
Phe
>WENV170245783
CEQP01124649
252148
Alphaproteobacteria
TGT
Thr
>WENV170246150
CEQP01153657
23672
Alphaproteobacteria
GCT
Ser
>WENV170246540
CEQP01238067
80837
Alphaproteobacteria
TAA
Leu
>WENV170246482
CEQP01210619
147283
Alphaproteobacteria
GTG
His
>WENV170244945
CEQP01056469
319925
Alphaproteobacteria
TGT
Thr
>WENV170245609
CEQP01109576
412281
Alphaproteobacteria
CTG
Gln
>WENV170245557
CEQP01105434
369678
Alphaproteobacteria
GGT
Thr
>WENV170246627
CEQP01272380
147289
Alphaproteobacteria
GTC
Asp
>WENV170245955
CEQP01140262
21074
Alphaproteobacteria
GGA
Ser
>WENV170246676
CEQP01294072
191695
Alphaproteobacteria
CCT
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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