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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170750465
LUMG01013991
20025
Gammaproteobacteria
GGA
Ser
>WENV170750149
LUMG01000551
283668
Gammaproteobacteria
TTT
Lys
>WENV170750256
LUMG01002378
147053
Gammaproteobacteria
GTT
Asn
>WENV170750300
LUMG01003561
145260
Gammaproteobacteria
CAT
Met
>WENV170750188
LUMG01000912
185163
Gammaproteobacteria
ACG
Arg
>WENV170750128
LUMG01000385
145261
Gammaproteobacteria
CAT
Met
>WENV170750505
LUMG01017904
16284
Gammaproteobacteria
TGA
Ser
>WENV170750151
LUMG01000568
340801
Gammaproteobacteria
CCT
Arg
>WENV170750169
LUMG01000658
97031
Gammaproteobacteria
TAG
Leu
>WENV170750301
LUMG01003561
97031
Gammaproteobacteria
TAG
Leu
>WENV170750170
LUMG01000658
149038
Gammaproteobacteria
TGG
Pro
>WENV170750028
LUMG01000016
247974
Gammaproteobacteria
CCA
Trp
>WENV170750217
LUMG01001256
59830
Gammaproteobacteria
CAA
Leu
>WENV170750160
LUMG01000619
240084
Gammaproteobacteria
GGT
Thr
>WENV170750187
LUMG01000912
10767
Gammaproteobacteria
GCT
Ser
>WENV170750026
LUMG01000013
411842
Gammaproteobacteria
GCA
Cys
>WENV170750161
LUMG01000622
195303
Gammaproteobacteria
GAT
Ile
>WENV170750361
LUMG01005702
128930
Gammaproteobacteria
GTC
Asp
>WENV170750342
LUMG01004812
149037
Gammaproteobacteria
GAC
Val
>WENV170750025
LUMG01000013
270352
Gammaproteobacteria
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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