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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170814305
MDSW01214499
199859
Gammaproteobacteria
CAT
Met
>WENV170813691
MDSW01204735
277725
Gammaproteobacteria
TAC
Val
>WENV170802047
MDSW01006648
58767
Gammaproteobacteria
CAG
Leu
>WENV170808239
MDSW01111555
95653
Gammaproteobacteria
GAG
Leu
>WENV170802737
MDSW01018697
282537
Gammaproteobacteria
TTC
Glu
>WENV170809369
MDSW01130724
282537
Gammaproteobacteria
TTC
Glu
>WENV170805025
MDSW01057547
146435
Gammaproteobacteria
TGG
Pro
>WENV170805427
MDSW01064782
146435
Gammaproteobacteria
TGG
Pro
>WENV170802020
MDSW01006166
279385
Gammaproteobacteria
TTT
Lys
>WENV170803385
MDSW01029342
279385
Gammaproteobacteria
TTT
Lys
>WENV170810861
MDSW01156305
279385
Gammaproteobacteria
TTT
Lys
>WENV170808012
MDSW01107911
244202
Gammaproteobacteria
TTT
Lys
>WENV170814573
MDSW01219343
61925
Gammaproteobacteria
TAA
Leu
>WENV170808530
MDSW01116407
108171
Gammaproteobacteria
GTA
Tyr
>WENV170807422
MDSW01098315
147114
Gammaproteobacteria
CCT
Arg
>WENV170804478
MDSW01048161
46594
Gammaproteobacteria
GGA
Ser
>WENV170811364
MDSW01165346
163940
Gammaproteobacteria
CCG
Arg
>WENV170811886
MDSW01174268
59211
Gammaproteobacteria
TAA
Leu
>WENV170802252
MDSW01010247
417674
Gammaproteobacteria
GCA
Cys
>WENV170810228
MDSW01145263
154268
Gammaproteobacteria
ACG
Arg
>WENV170804013
MDSW01040034
307413
Gammaproteobacteria
TTT
Lys
>WENV170811578
MDSW01169217
146791
Gammaproteobacteria
GAC
Val
>WENV170812467
MDSW01183970
69672
Gammaproteobacteria
TAA
Leu
>WENV170814692
MDSW01221404
69672
Gammaproteobacteria
TAA
Leu
>WENV170803838
MDSW01036601
301232
Gammaproteobacteria
TTC
Glu
>WENV170805164
MDSW01060156
44887
Gammaproteobacteria
TAA
Leu
>WENV170802119
MDSW01008176
52727
Gammaproteobacteria
GGA
Ser
>WENV170804655
MDSW01051272
289927
Gammaproteobacteria
GAA
Phe
>WENV170807306
MDSW01096387
289927
Gammaproteobacteria
GAA
Phe
>WENV170803617
MDSW01032681
202944
Gammaproteobacteria
TGG
Pro
>WENV170806518
MDSW01082967
202944
Gammaproteobacteria
TGG
Pro
>WENV170805400
MDSW01064230
419491
Gammaproteobacteria
CTG
Gln
>WENV170813639
MDSW01203889
419491
Gammaproteobacteria
CTG
Gln
>WENV170802883
MDSW01020767
294663
Gammaproteobacteria
TTC
Glu
>WENV170803759
MDSW01035027
147324
Gammaproteobacteria
GTG
His
>WENV170812254
MDSW01180429
147324
Gammaproteobacteria
GTG
His
>WENV170811503
MDSW01167872
173040
Gammaproteobacteria
GAC
Val
>WENV170809301
MDSW01129478
99961
Gammaproteobacteria
GAG
Leu
>WENV170802172
MDSW01008994
145713
Gammaproteobacteria
CAT
Met
>WENV170807127
MDSW01093311
241136
Gammaproteobacteria
TTG
Gln
>WENV170802117
MDSW01008176
235886
Gammaproteobacteria
TTC
Glu
>WENV170808710
MDSW01119780
195303
Gammaproteobacteria
GAT
Ile
>WENV170809300
MDSW01129478
128930
Gammaproteobacteria
GTC
Asp
>WENV170806118
MDSW01077021
247088
Gammaproteobacteria
CCA
Trp
>WENV170809905
MDSW01140111
237159
Gammaproteobacteria
GTG
His
>WENV170802874
MDSW01020605
16840
Gammaproteobacteria
GGA
Ser
>WENV170805163
MDSW01060156
411735
Gammaproteobacteria
GCA
Cys
>WENV170807458
MDSW01098995
411735
Gammaproteobacteria
GCA
Cys
>WENV170802405
MDSW01012665
288517
Gammaproteobacteria
TGT
Thr
>WENV170805001
MDSW01057151
198797
Gammaproteobacteria
TGG
Pro
>WENV170813482
MDSW01200857
198797
Gammaproteobacteria
TGG
Pro
>WENV170812866
MDSW01190443
150183
Gammaproteobacteria
CCG
Arg
>WENV170807853
MDSW01105457
73305
Gammaproteobacteria
TAA
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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