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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170816234
MDSX01026517
365250
Alphaproteobacteria
GCC
Gly
>WENV170816723
MDSX01035566
365250
Alphaproteobacteria
GCC
Gly
>WENV170820095
MDSX01105735
365250
Alphaproteobacteria
GCC
Gly
>WENV170816849
MDSX01038802
149985
Alphaproteobacteria
ACG
Arg
>WENV170819346
MDSX01091000
80917
Alphaproteobacteria
CAG
Leu
>WENV170817479
MDSX01051173
267922
Alphaproteobacteria
CCA
Trp
>WENV170818945
MDSX01082488
267922
Alphaproteobacteria
CCA
Trp
>WENV170820118
MDSX01106298
113700
Alphaproteobacteria
>WENV170816702
MDSX01035268
23468
Alphaproteobacteria
GCT
Ser
>WENV170818172
MDSX01065006
176908
Alphaproteobacteria
GTC
Asp
>WENV170818931
MDSX01082244
176908
Alphaproteobacteria
GTC
Asp
>WENV170818930
MDSX01082235
338282
Alphaproteobacteria
GTT
Asn
>WENV170820133
MDSX01106826
338282
Alphaproteobacteria
GTT
Asn
>WENV170815695
MDSX01015354
339722
Alphaproteobacteria
TTG
Gln
>WENV170820099
MDSX01105780
147334
Alphaproteobacteria
CAT
Met
>WENV170817418
MDSX01049954
157999
Alphaproteobacteria
TCT
Arg
>WENV170815589
MDSX01012925
281594
Alphaproteobacteria
TGT
Thr
>WENV170816892
MDSX01039698
281594
Alphaproteobacteria
TGT
Thr
>WENV170818712
MDSX01077445
340106
Alphaproteobacteria
GCC
Gly
>WENV170819564
MDSX01095168
167926
Alphaproteobacteria
CAT
Met
>WENV170816506
MDSX01031429
148083
Alphaproteobacteria
ACG
Arg
>WENV170819190
MDSX01087820
148083
Alphaproteobacteria
ACG
Arg
>WENV170819303
MDSX01090088
148083
Alphaproteobacteria
ACG
Arg
>WENV170816244
MDSX01026814
147877
Alphaproteobacteria
GTG
His
>WENV170815454
MDSX01010482
359842
Alphaproteobacteria
GAC
Val
>WENV170816617
MDSX01033651
359842
Alphaproteobacteria
GAC
Val
>WENV170816724
MDSX01035598
163860
Alphaproteobacteria
GGG
Pro
>WENV170817261
MDSX01046864
163860
Alphaproteobacteria
GGG
Pro
>WENV170818474
MDSX01072413
412477
Alphaproteobacteria
GCA
Cys
>WENV170819447
MDSX01092876
241518
Alphaproteobacteria
CCA
Trp
>WENV170818066
MDSX01062885
344517
Alphaproteobacteria
GTT
Asn
>WENV170818103
MDSX01063584
344517
Alphaproteobacteria
GTT
Asn
>WENV170819278
MDSX01089635
147283
Alphaproteobacteria
GTG
His
>WENV170816274
MDSX01027547
339606
Alphaproteobacteria
>WENV170817045
MDSX01042800
339606
Alphaproteobacteria
>WENV170819143
MDSX01086591
412424
Alphaproteobacteria
TCC
Gly
>WENV170820091
MDSX01105670
412424
Alphaproteobacteria
TCC
Gly
>WENV170820107
MDSX01106072
412424
Alphaproteobacteria
TCC
Gly
>WENV170815686
MDSX01015052
150356
Alphaproteobacteria
GTC
Asp
>WENV170816176
MDSX01025187
150356
Alphaproteobacteria
GTC
Asp
>WENV170817972
MDSX01060716
150356
Alphaproteobacteria
GTC
Asp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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