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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180104995
OAPD01001087
147089
Alphaproteobacteria
ACG
Arg
>WENV180105303
OAPD01027560
267922
Alphaproteobacteria
CCA
Trp
>WENV180105319
OAPD01030236
148428
Alphaproteobacteria
TCT
Arg
>WENV180105033
OAPD01002096
113700
Alphaproteobacteria
>WENV180105058
OAPD01003026
23468
Alphaproteobacteria
GCT
Ser
>WENV180105642
OAPD01126979
256175
Alphaproteobacteria
TGT
Thr
>WENV180105115
OAPD01006735
148353
Alphaproteobacteria
CAT
Met
>WENV180105052
OAPD01002795
338282
Alphaproteobacteria
GTT
Asn
>WENV180105456
OAPD01062271
338282
Alphaproteobacteria
GTT
Asn
>WENV180105034
OAPD01002188
159426
Alphaproteobacteria
CAT
Met
>WENV180105477
OAPD01069550
25534
Alphaproteobacteria
CGA
Ser
>WENV180105535
OAPD01088291
236134
Alphaproteobacteria
TAC
Val
>WENV180105726
OAPD01171710
339454
Alphaproteobacteria
>WENV180105232
OAPD01017806
147879
Alphaproteobacteria
TGG
Pro
>WENV180105241
OAPD01019295
339457
Alphaproteobacteria
>WENV180105191
OAPD01013564
345376
Alphaproteobacteria
GAC
Val
>WENV180105004
OAPD01001350
339722
Alphaproteobacteria
TTG
Gln
>WENV180105251
OAPD01020489
339722
Alphaproteobacteria
TTG
Gln
>WENV180105254
OAPD01020645
147334
Alphaproteobacteria
CAT
Met
>WENV180105585
OAPD01105372
147334
Alphaproteobacteria
CAT
Met
>WENV180105561
OAPD01098812
147876
Alphaproteobacteria
TCT
Arg
>WENV180105739
OAPD01177308
147876
Alphaproteobacteria
TCT
Arg
>WENV180105235
OAPD01017939
249928
Alphaproteobacteria
TAC
Val
>WENV180105738
OAPD01176784
148265
Alphaproteobacteria
CCT
Arg
>WENV180105175
OAPD01011995
257000
Alphaproteobacteria
GAA
Phe
>WENV180105392
OAPD01044138
167926
Alphaproteobacteria
CAT
Met
>WENV180105186
OAPD01013222
161002
Alphaproteobacteria
GTG
His
>WENV180105524
OAPD01084675
59164
Alphaproteobacteria
GAG
Leu
>WENV180105610
OAPD01117805
147877
Alphaproteobacteria
GTG
His
>WENV180105600
OAPD01112106
254387
Alphaproteobacteria
TTT
Lys
>WENV180104967
OAPD01000431
359842
Alphaproteobacteria
GAC
Val
>WENV180105372
OAPD01040612
166801
Alphaproteobacteria
TCG
Arg
>WENV180105249
OAPD01020251
348781
Alphaproteobacteria
GAA
Phe
>WENV180105361
OAPD01039390
163860
Alphaproteobacteria
GGG
Pro
>WENV180105534
OAPD01088195
361238
Alphaproteobacteria
GCC
Gly
>WENV180105389
OAPD01043156
241518
Alphaproteobacteria
CCA
Trp
>WENV180105219
OAPD01017007
338760
Alphaproteobacteria
GAA
Phe
>WENV180105495
OAPD01074992
82948
Alphaproteobacteria
CAA
Leu
>WENV180105451
OAPD01060121
270451
Alphaproteobacteria
CGT
Thr
>WENV180105727
OAPD01172441
147283
Alphaproteobacteria
GTG
His
>WENV180105093
OAPD01005034
237479
Alphaproteobacteria
TTT
Lys
>WENV180105089
OAPD01004855
23611
Alphaproteobacteria
CGA
Ser
>WENV180105001
OAPD01001215
162524
Alphaproteobacteria
ACG
Arg
>WENV180104925
OAPD01000028
268365
Alphaproteobacteria
CCA
Trp
>WENV180105403
OAPD01046985
349650
Alphaproteobacteria
CAC
Val
>WENV180105084
OAPD01004276
4717
Alphaproteobacteria
GCT
Ser
>WENV180105041
OAPD01002405
339606
Alphaproteobacteria
>WENV180105485
OAPD01072572
339609
Alphaproteobacteria
GGT
Thr
>WENV180104999
OAPD01001199
412424
Alphaproteobacteria
TCC
Gly
>WENV180105363
OAPD01039858
150356
Alphaproteobacteria
GTC
Asp
>WENV180105000
OAPD01001214
412181
Alphaproteobacteria
CTG
Gln
>WENV180105116
OAPD01006735
147088
Alphaproteobacteria
CCT
Arg
>WENV180105021
OAPD01001783
237574
Alphaproteobacteria
TGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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