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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180112821
OAPP01122690
306070
Alphaproteobacteria
CCA
Trp
>WENV180112228
OAPP01004988
113700
Alphaproteobacteria
>WENV180112879
OAPP01155021
256175
Alphaproteobacteria
TGT
Thr
>WENV180112898
OAPP01164922
257573
Alphaproteobacteria
GAA
Phe
>WENV180112510
OAPP01031434
176908
Alphaproteobacteria
GTC
Asp
>WENV180112572
OAPP01042227
282595
Alphaproteobacteria
CCA
Trp
>WENV180112407
OAPP01018268
435528
Alphaproteobacteria
GCA
Cys
>WENV180112748
OAPP01092690
338282
Alphaproteobacteria
GTT
Asn
>WENV180112375
OAPP01015946
339722
Alphaproteobacteria
TTG
Gln
>WENV180112778
OAPP01107331
283763
Alphaproteobacteria
TGC
Ala
>WENV180112167
OAPP01001265
359842
Alphaproteobacteria
GAC
Val
>WENV180112839
OAPP01133994
241518
Alphaproteobacteria
CCA
Trp
>WENV180112950
OAPP01192967
338760
Alphaproteobacteria
GAA
Phe
>WENV180112387
OAPP01017151
412424
Alphaproteobacteria
TCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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