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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180529365
OCHK01000012
119661
Verrucomicrobiota
CAA
Leu
>WENV180530024
OCHK01000743
155256
Verrucomicrobiota
TCT
Arg
>WENV180529347
OCHK01000006
246701
Verrucomicrobiota
TTT
Lys
>WENV180529397
OCHK01000021
345141
Verrucomicrobiota
TTG
Gln
>WENV180529703
OCHK01000185
345133
Verrucomicrobiota
GAC
Val
>WENV180529946
OCHK01000574
82054
Verrucomicrobiota
GTA
Tyr
>WENV180529644
OCHK01000152
246677
Verrucomicrobiota
CTT
Lys
>WENV180529645
OCHK01000152
246677
Verrucomicrobiota
CTT
Lys
>WENV180530681
OCHK01006772
344844
Verrucomicrobiota
GCA
Cys
>WENV180529402
OCHK01000022
155264
Verrucomicrobiota
GGG
Pro
>WENV180529398
OCHK01000021
344845
Verrucomicrobiota
CTG
Gln
>WENV180529704
OCHK01000185
128202
Verrucomicrobiota
GTC
Asp
>WENV180529801
OCHK01000284
128202
Verrucomicrobiota
GTC
Asp
>WENV180529403
OCHK01000022
414625
Verrucomicrobiota
CCC
Gly
>WENV180529828
OCHK01000326
46246
Verrucomicrobiota
TGA
Ser
>WENV180529560
OCHK01000091
246700
Verrucomicrobiota
TTC
Glu
>WENV180529563
OCHK01000091
246700
Verrucomicrobiota
TTC
Glu
>WENV180529725
OCHK01000206
246700
Verrucomicrobiota
TTC
Glu
>WENV180529562
OCHK01000091
246687
Verrucomicrobiota
CGC
Ala
>WENV180529399
OCHK01000022
419909
Verrucomicrobiota
TCC
Gly
>WENV180529396
OCHK01000021
344841
Verrucomicrobiota
CAC
Val
>WENV180530003
OCHK01000715
60880
Verrucomicrobiota
CAG
Leu
>WENV180529361
OCHK01000012
82056
Verrucomicrobiota
TAA
Leu
>WENV180529643
OCHK01000152
344842
Verrucomicrobiota
CGT
Thr
>WENV180530057
OCHK01000859
170105
Verrucomicrobiota
CAT
Met
>WENV180529613
OCHK01000123
287733
Verrucomicrobiota
CCA
Trp
>WENV180529561
OCHK01000091
345123
Verrucomicrobiota
TGT
Thr
>WENV180529360
OCHK01000012
345110
Verrucomicrobiota
CCT
Arg
>WENV180529726
OCHK01000206
344839
Verrucomicrobiota
GTG
His
>WENV180529767
OCHK01000250
7274
Verrucomicrobiota
CGA
Ser
>WENV180529362
OCHK01000012
246260
Verrucomicrobiota
>WENV180529642
OCHK01000152
155268
Verrucomicrobiota
CGG
Pro
>WENV180529890
OCHK01000434
82181
Verrucomicrobiota
AAG
Leu
>WENV180529400
OCHK01000022
246728
Verrucomicrobiota
GAA
Phe
>WENV180529363
OCHK01000012
7256
Verrucomicrobiota
GCT
Ser
>WENV180529728
OCHK01000206
345115
Verrucomicrobiota
CAT
Met
>WENV180529949
OCHK01000579
345119
Verrucomicrobiota
TAC
Val
>WENV180529945
OCHK01000574
345124
Verrucomicrobiota
GTT
Asn
>WENV180529800
OCHK01000284
17023
Verrucomicrobiota
GGA
Ser
>WENV180529724
OCHK01000206
368497
Verrucomicrobiota
GCC
Gly
>WENV180529891
OCHK01000437
368497
Verrucomicrobiota
GCC
Gly
>WENV180529404
OCHK01000022
345142
Verrucomicrobiota
CCG
Arg
>WENV180529727
OCHK01000206
246709
Verrucomicrobiota
CAT
Met
>WENV180529401
OCHK01000022
154693
Verrucomicrobiota
TGG
Pro
>WENV180529612
OCHK01000123
344751
Verrucomicrobiota
GGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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