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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV182153889
OHLO01000223
119661
Verrucomicrobiota
CAA
Leu
>WENV182153939
OHLO01000569
155256
Verrucomicrobiota
TCT
Arg
>WENV182153860
OHLO01000165
246701
Verrucomicrobiota
TTT
Lys
>WENV182153894
OHLO01000231
345141
Verrucomicrobiota
TTG
Gln
>WENV182153987
OHLO01001184
345133
Verrucomicrobiota
GAC
Val
>WENV182153776
OHLO01000011
82054
Verrucomicrobiota
GTA
Tyr
>WENV182153874
OHLO01000188
246677
Verrucomicrobiota
CTT
Lys
>WENV182153875
OHLO01000188
246677
Verrucomicrobiota
CTT
Lys
>WENV182153843
OHLO01000098
344844
Verrucomicrobiota
GCA
Cys
>WENV182153863
OHLO01000178
155264
Verrucomicrobiota
GGG
Pro
>WENV182153802
OHLO01000041
344845
Verrucomicrobiota
CTG
Gln
>WENV182153803
OHLO01000041
128202
Verrucomicrobiota
GTC
Asp
>WENV182153900
OHLO01000256
128202
Verrucomicrobiota
GTC
Asp
>WENV182153913
OHLO01000299
414625
Verrucomicrobiota
CCC
Gly
>WENV182153896
OHLO01000236
46246
Verrucomicrobiota
TGA
Ser
>WENV182153809
OHLO01000050
97755
Verrucomicrobiota
TAG
Leu
>WENV182153823
OHLO01000072
246700
Verrucomicrobiota
TTC
Glu
>WENV182153936
OHLO01000505
246700
Verrucomicrobiota
TTC
Glu
>WENV182153993
OHLO01001334
246700
Verrucomicrobiota
TTC
Glu
>WENV182153839
OHLO01000085
246687
Verrucomicrobiota
CGC
Ala
>WENV182153912
OHLO01000299
419909
Verrucomicrobiota
TCC
Gly
>WENV182153794
OHLO01000031
344841
Verrucomicrobiota
CAC
Val
>WENV182153943
OHLO01000596
60880
Verrucomicrobiota
CAG
Leu
>WENV182153915
OHLO01000300
82056
Verrucomicrobiota
TAA
Leu
>WENV182153893
OHLO01000227
344842
Verrucomicrobiota
CGT
Thr
>WENV182153818
OHLO01000063
170105
Verrucomicrobiota
CAT
Met
>WENV182153790
OHLO01000025
287733
Verrucomicrobiota
CCA
Trp
>WENV182153828
OHLO01000076
345123
Verrucomicrobiota
TGT
Thr
>WENV182153838
OHLO01000083
345110
Verrucomicrobiota
CCT
Arg
>WENV182153824
OHLO01000072
344839
Verrucomicrobiota
GTG
His
>WENV182153810
OHLO01000053
7274
Verrucomicrobiota
CGA
Ser
>WENV182153916
OHLO01000300
246260
Verrucomicrobiota
>WENV182153892
OHLO01000227
155268
Verrucomicrobiota
CGG
Pro
>WENV182153910
OHLO01000292
82181
Verrucomicrobiota
AAG
Leu
>WENV182153864
OHLO01000178
246728
Verrucomicrobiota
GAA
Phe
>WENV182153917
OHLO01000300
7256
Verrucomicrobiota
GCT
Ser
>WENV182153937
OHLO01000511
345115
Verrucomicrobiota
CAT
Met
>WENV182153845
OHLO01000103
345119
Verrucomicrobiota
TAC
Val
>WENV182153775
OHLO01000011
345124
Verrucomicrobiota
GTT
Asn
>WENV182153895
OHLO01000234
17023
Verrucomicrobiota
GGA
Ser
>WENV182153793
OHLO01000031
368497
Verrucomicrobiota
GCC
Gly
>WENV182153822
OHLO01000072
368497
Verrucomicrobiota
GCC
Gly
>WENV182153826
OHLO01000073
345142
Verrucomicrobiota
CCG
Arg
>WENV182153825
OHLO01000072
246709
Verrucomicrobiota
CAT
Met
>WENV182153865
OHLO01000178
154693
Verrucomicrobiota
TGG
Pro
>WENV182153789
OHLO01000025
344751
Verrucomicrobiota
GGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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