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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1000193
SRR001036.303076
113638
Alphaproteobacteria
GAG
Leu
>SRA1000139
SRR001036.40545
281959
Alphaproteobacteria
CGC
Ala
>SRA1000155
SRR001036.149757
338269
Alphaproteobacteria
GTT
Asn
>SRA1000168
SRR001036.245786
338269
Alphaproteobacteria
GTT
Asn
>SRA1000144
SRR001036.62649
368245
Alphaproteobacteria
>SRA1000178
SRR001036.279971
368245
Alphaproteobacteria
>SRA1000191
SRR001036.302815
339750
Alphaproteobacteria
GGT
Thr
>SRA1000214
SRR001037.79778
148158
Alphaproteobacteria
ACG
Arg
>SRA1000149
SRR001036.93448
148158
Alphaproteobacteria
ACG
Arg
>SRA1000246
SRR001037.264567
95928
Alphaproteobacteria
TAG
Leu
>SRA1000160
SRR001036.166887
95928
Alphaproteobacteria
TAG
Leu
>SRA1000240
SRR001037.239803
148306
Alphaproteobacteria
GTG
His
>SRA1000245
SRR001037.255303
148306
Alphaproteobacteria
GTG
His
>SRA1000138
SRR001036.13476
148306
Alphaproteobacteria
GTG
His
>SRA1000166
SRR001036.218364
148306
Alphaproteobacteria
GTG
His
>SRA1000208
SRR001037.1428
81064
Alphaproteobacteria
GTA
Tyr
>SRA1000142
SRR001036.54980
81064
Alphaproteobacteria
GTA
Tyr
>SRA1000157
SRR001036.155457
81064
Alphaproteobacteria
GTA
Tyr
>SRA1000158
SRR001036.161401
81064
Alphaproteobacteria
GTA
Tyr
>SRA1000253
SRR001037.304240
236134
Alphaproteobacteria
TAC
Val
>SRA1000185
SRR001036.295160
236134
Alphaproteobacteria
TAC
Val
>SRA1000204
SRR001036.353905
236134
Alphaproteobacteria
TAC
Val
>SRA1000205
SRR001036.354125
19688
Alphaproteobacteria
GCT
Ser
>SRA1000220
SRR001037.116516
240120
Alphaproteobacteria
CTT
Lys
>SRA1000247
SRR001037.270549
241021
Alphaproteobacteria
GGC
Ala
>SRA1000221
SRR001037.119182
339514
Alphaproteobacteria
GGT
Thr
>SRA1000239
SRR001037.234503
412260
Alphaproteobacteria
TCC
Gly
>SRA1000251
SRR001037.297376
254294
Alphaproteobacteria
>SRA1000254
SRR001037.304323
254294
Alphaproteobacteria
>SRA1000232
SRR001037.181101
236004
Alphaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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