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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
74 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003061
SRR002326.176551
45127
Betaproteobacteria
CGA
Ser
>SRA1003232
SRR002326.322742
45127
Betaproteobacteria
CGA
Ser
>SRA1003267
SRR002326.353186
45127
Betaproteobacteria
CGA
Ser
>SRA1003450
SRR002326.477613
45127
Betaproteobacteria
CGA
Ser
>SRA1003706
SRR002327.135576
45127
Betaproteobacteria
CGA
Ser
>SRA1003989
SRR002328.78347
45127
Betaproteobacteria
CGA
Ser
>SRA1002846
SRR002326.55330
267868
Betaproteobacteria
GTG
His
>SRA1003312
SRR002326.384563
267868
Betaproteobacteria
GTG
His
>SRA1003335
SRR002326.398108
267868
Betaproteobacteria
GTG
His
>SRA1003683
SRR002327.119536
267868
Betaproteobacteria
GTG
His
>SRA1003848
SRR002327.232741
267868
Betaproteobacteria
GTG
His
>SRA1003122
SRR002326.217002
61237
Betaproteobacteria
TAG
Leu
>SRA1004083
SRR002328.137283
61237
Betaproteobacteria
TAG
Leu
>SRA1003307
SRR002326.379999
249068
Betaproteobacteria
CGC
Ala
>SRA1002967
SRR002326.128769
352197
Betaproteobacteria
GGT
Thr
>SRA1003147
SRR002326.243107
352197
Betaproteobacteria
GGT
Thr
>SRA1003720
SRR002327.144374
352197
Betaproteobacteria
GGT
Thr
>SRA1003731
SRR002327.148110
352197
Betaproteobacteria
GGT
Thr
>SRA1003736
SRR002327.151820
352197
Betaproteobacteria
GGT
Thr
>SRA1003772
SRR002327.174806
352197
Betaproteobacteria
GGT
Thr
>SRA1002963
SRR002326.126972
248203
Betaproteobacteria
GAA
Phe
>SRA1002861
SRR002326.63764
267870
Betaproteobacteria
TTC
Glu
>SRA1003013
SRR002326.151848
267870
Betaproteobacteria
TTC
Glu
>SRA1003821
SRR002327.209650
267870
Betaproteobacteria
TTC
Glu
>SRA1003240
SRR002326.331129
59085
Betaproteobacteria
TAG
Leu
>SRA1003259
SRR002326.346309
59085
Betaproteobacteria
TAG
Leu
>SRA1003127
SRR002326.226836
155690
Betaproteobacteria
TCT
Arg
>SRA1003028
SRR002326.160860
267882
Betaproteobacteria
TGC
Ala
>SRA1003458
SRR002326.479737
267882
Betaproteobacteria
TGC
Ala
>SRA1003599
SRR002327.59901
267882
Betaproteobacteria
TGC
Ala
>SRA1003662
SRR002327.102830
267882
Betaproteobacteria
TGC
Ala
>SRA1003852
SRR002327.234449
267882
Betaproteobacteria
TGC
Ala
>SRA1003117
SRR002326.211703
147332
Betaproteobacteria
CAT
Met
>SRA1002920
SRR002326.102118
152292
Betaproteobacteria
TTG
Gln
>SRA1003334
SRR002326.397668
152292
Betaproteobacteria
TTG
Gln
>SRA1003377
SRR002326.421428
152292
Betaproteobacteria
TTG
Gln
>SRA1003614
SRR002327.68507
152292
Betaproteobacteria
TTG
Gln
>SRA1003885
SRR002328.7891
152292
Betaproteobacteria
TTG
Gln
>SRA1004034
SRR002328.106513
152292
Betaproteobacteria
TTG
Gln
>SRA1002959
SRR002326.125502
251202
Betaproteobacteria
TGT
Thr
>SRA1003371
SRR002326.416202
251202
Betaproteobacteria
TGT
Thr
>SRA1003095
SRR002326.194932
245575
Betaproteobacteria
CGT
Thr
>SRA1003214
SRR002326.309762
245575
Betaproteobacteria
CGT
Thr
>SRA1003993
SRR002328.81942
245575
Betaproteobacteria
CGT
Thr
>SRA1003017
SRR002326.153095
145694
Betaproteobacteria
ACG
Arg
>SRA1003366
SRR002326.413180
145694
Betaproteobacteria
ACG
Arg
>SRA1003449
SRR002326.477394
145694
Betaproteobacteria
ACG
Arg
>SRA1003602
SRR002327.62690
145694
Betaproteobacteria
ACG
Arg
>SRA1003643
SRR002327.87127
145694
Betaproteobacteria
ACG
Arg
>SRA1003728
SRR002327.146921
145694
Betaproteobacteria
ACG
Arg
>SRA1003835
SRR002327.219092
145694
Betaproteobacteria
ACG
Arg
>SRA1002834
SRR002326.46698
154789
Betaproteobacteria
CAT
Met
>SRA1003630
SRR002327.76046
154789
Betaproteobacteria
CAT
Met
>SRA1003210
SRR002326.307419
147666
Betaproteobacteria
CAT
Met
>SRA1003948
SRR002328.56313
147666
Betaproteobacteria
CAT
Met
>SRA1002785
SRR002326.12879
239140
Betaproteobacteria
TTT
Lys
>SRA1003733
SRR002327.150608
239140
Betaproteobacteria
TTT
Lys
>SRA1003998
SRR002328.89399
239140
Betaproteobacteria
TTT
Lys
>SRA1004137
SRR002328.167224
239140
Betaproteobacteria
TTT
Lys
>SRA1002806
SRR002326.30734
251517
Betaproteobacteria
TGT
Thr
>SRA1003348
SRR002326.405318
251517
Betaproteobacteria
TGT
Thr
>SRA1004037
SRR002328.109162
293915
Betaproteobacteria
GTT
Asn
>SRA1004189
SRR002328.190446
199861
Betaproteobacteria
CAT
Met
>SRA1004238
SRR002328.216529
199861
Betaproteobacteria
CAT
Met
>SRA1004304
SRR002328.258734
199861
Betaproteobacteria
CAT
Met
>SRA1004182
SRR002328.187009
412167
Betaproteobacteria
GCA
Cys
>SRA1004186
SRR002328.189655
412167
Betaproteobacteria
GCA
Cys
>SRA1004033
SRR002328.105765
154591
Betaproteobacteria
CAT
Met
>SRA1004158
SRR002328.176774
154591
Betaproteobacteria
CAT
Met
>SRA1003600
SRR002327.60749
283971
Betaproteobacteria
TAC
Val
>SRA1003968
SRR002328.63250
283971
Betaproteobacteria
TAC
Val
>SRA1003939
SRR002328.50074
251462
Betaproteobacteria
GCC
Gly
>SRA1003778
SRR002327.180594
412588
Betaproteobacteria
GCA
Cys
>SRA1003610
SRR002327.67645
182616
Betaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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