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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1008218
SRR020490.263269
162341
Cyanobacteriota
TCT
Arg
>SRA1008496
SRR020490.393598
162341
Cyanobacteriota
TCT
Arg
>SRA1008673
SRR020490.452709
162341
Cyanobacteriota
TCT
Arg
>SRA1008713
SRR020490.468995
162341
Cyanobacteriota
TCT
Arg
>SRA1007977
SRR020490.148062
267489
Cyanobacteriota
GGC
Ala
>SRA1008551
SRR020490.414467
267489
Cyanobacteriota
GGC
Ala
>SRA1008596
SRR020490.426627
267489
Cyanobacteriota
GGC
Ala
>SRA1007693
SRR020490.6230
310428
Cyanobacteriota
TGC
Ala
>SRA1007872
SRR020490.103015
310428
Cyanobacteriota
TGC
Ala
>SRA1007941
SRR020490.132484
310428
Cyanobacteriota
TGC
Ala
>SRA1008043
SRR020490.181540
310428
Cyanobacteriota
TGC
Ala
>SRA1008346
SRR020490.321025
310428
Cyanobacteriota
TGC
Ala
>SRA1008421
SRR020490.351198
310428
Cyanobacteriota
TGC
Ala
>SRA1007750
SRR020490.39796
153480
Cyanobacteriota
CAT
Met
>SRA1007755
SRR020490.41683
153480
Cyanobacteriota
CAT
Met
>SRA1008073
SRR020490.190651
153480
Cyanobacteriota
CAT
Met
>SRA1008521
SRR020490.407001
153480
Cyanobacteriota
CAT
Met
>SRA1008021
SRR020490.170007
149253
Cyanobacteriota
ACG
Arg
>SRA1007756
SRR020490.42090
341034
Cyanobacteriota
GGT
Thr
>SRA1007792
SRR020490.62074
341034
Cyanobacteriota
GGT
Thr
>SRA1007828
SRR020490.82390
341034
Cyanobacteriota
GGT
Thr
>SRA1007858
SRR020490.96187
341034
Cyanobacteriota
GGT
Thr
>SRA1007937
SRR020490.130223
341034
Cyanobacteriota
GGT
Thr
>SRA1008166
SRR020490.231752
341034
Cyanobacteriota
GGT
Thr
>SRA1008314
SRR020490.309664
341034
Cyanobacteriota
GGT
Thr
>SRA1008529
SRR020490.408472
341034
Cyanobacteriota
GGT
Thr
>SRA1007716
SRR020490.19960
145761
Cyanobacteriota
GTC
Asp
>SRA1007733
SRR020490.33570
145761
Cyanobacteriota
GTC
Asp
>SRA1007738
SRR020490.34763
145761
Cyanobacteriota
GTC
Asp
>SRA1007801
SRR020490.69868
145761
Cyanobacteriota
GTC
Asp
>SRA1008068
SRR020490.188915
145761
Cyanobacteriota
GTC
Asp
>SRA1008229
SRR020490.269532
145761
Cyanobacteriota
GTC
Asp
>SRA1008272
SRR020490.289758
145761
Cyanobacteriota
GTC
Asp
>SRA1008423
SRR020490.352340
145761
Cyanobacteriota
GTC
Asp
>SRA1008464
SRR020490.375737
145761
Cyanobacteriota
GTC
Asp
>SRA1008506
SRR020490.401033
145761
Cyanobacteriota
GTC
Asp
>SRA1007836
SRR020490.87379
306125
Cyanobacteriota
GTG
His
>SRA1008366
SRR020490.328443
306125
Cyanobacteriota
GTG
His
>SRA1008400
SRR020490.345003
306125
Cyanobacteriota
GTG
His
>SRA1008544
SRR020490.412444
306125
Cyanobacteriota
GTG
His
>SRA1008447
SRR020490.361954
411836
Cyanobacteriota
TCC
Gly
>SRA1008131
SRR020490.218410
164907
Cyanobacteriota
GGG
Pro
>SRA1008385
SRR020490.336811
164907
Cyanobacteriota
GGG
Pro
>SRA1008085
SRR020490.195231
387387
Cyanobacteriota
GAC
Val
>SRA1008162
SRR020490.229848
387387
Cyanobacteriota
GAC
Val
>SRA1008172
SRR020490.234844
387387
Cyanobacteriota
GAC
Val
>SRA1008609
SRR020490.430841
387387
Cyanobacteriota
GAC
Val
>SRA1007925
SRR020490.123968
366531
Cyanobacteriota
TTG
Gln
>SRA1008183
SRR020490.242698
366531
Cyanobacteriota
TTG
Gln
>SRA1008232
SRR020490.270733
366531
Cyanobacteriota
TTG
Gln
>SRA1008280
SRR020490.294107
366531
Cyanobacteriota
TTG
Gln
>SRA1008541
SRR020490.411544
366531
Cyanobacteriota
TTG
Gln
>SRA1008657
SRR020490.447087
366531
Cyanobacteriota
TTG
Gln
>SRA1008691
SRR020490.460549
366531
Cyanobacteriota
TTG
Gln
>SRA1008258
SRR020490.284791
95762
Cyanobacteriota
AAG
Leu
>SRA1008360
SRR020490.326349
245150
Cyanobacteriota
GTG
His
>SRA1008035
SRR020490.178967
363933
Cyanobacteriota
GTT
Asn
>SRA1008112
SRR020490.208007
363933
Cyanobacteriota
GTT
Asn
>SRA1007852
SRR020490.94493
37357
Cyanobacteriota
TAA
Leu
>SRA1007743
SRR020490.36364
145893
Cyanobacteriota
CAT
Met
>SRA1008330
SRR020490.315072
145893
Cyanobacteriota
CAT
Met
>SRA1008451
SRR020490.364020
145893
Cyanobacteriota
CAT
Met
>SRA1008471
SRR020490.378859
145893
Cyanobacteriota
CAT
Met
>SRA1007793
SRR020490.62235
23971
Cyanobacteriota
TGA
Ser
>SRA1007877
SRR020490.106057
23971
Cyanobacteriota
TGA
Ser
>SRA1008190
SRR020490.245735
23971
Cyanobacteriota
TGA
Ser
>SRA1007853
SRR020490.94696
275071
Cyanobacteriota
CCA
Trp
>SRA1008027
SRR020490.173355
275071
Cyanobacteriota
CCA
Trp
>SRA1008298
SRR020490.303635
275071
Cyanobacteriota
CCA
Trp
>SRA1008408
SRR020490.346705
275071
Cyanobacteriota
CCA
Trp
>SRA1008448
SRR020490.362216
275071
Cyanobacteriota
CCA
Trp
>SRA1008538
SRR020490.411071
275071
Cyanobacteriota
CCA
Trp
>SRA1008623
SRR020490.437100
275071
Cyanobacteriota
CCA
Trp
>SRA1008681
SRR020490.457506
275071
Cyanobacteriota
CCA
Trp
>SRA1008509
SRR020490.401932
149623
Cyanobacteriota
GAT
Ile
>SRA1007991
SRR020490.154506
338782
Cyanobacteriota
GTT
Asn
>SRA1008033
SRR020490.178175
338782
Cyanobacteriota
GTT
Asn
>SRA1008044
SRR020490.181634
338782
Cyanobacteriota
GTT
Asn
>SRA1008321
SRR020490.311475
338782
Cyanobacteriota
GTT
Asn
>SRA1008374
SRR020490.330772
338782
Cyanobacteriota
GTT
Asn
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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