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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1013010
SRR020494.63112
267489
Cyanobacteriota
GGC
Ala
>SRA1012984
SRR020494.41118
252089
Cyanobacteriota
GTG
His
>SRA1012991
SRR020494.50039
252089
Cyanobacteriota
GTG
His
>SRA1013014
SRR020494.68325
252089
Cyanobacteriota
GTG
His
>SRA1013035
SRR020494.88059
275577
Cyanobacteriota
TGC
Ala
>SRA1012964
SRR020494.20834
149253
Cyanobacteriota
ACG
Arg
>SRA1013044
SRR020494.98547
149253
Cyanobacteriota
ACG
Arg
>SRA1012968
SRR020494.24871
145761
Cyanobacteriota
GTC
Asp
>SRA1013005
SRR020494.58419
145761
Cyanobacteriota
GTC
Asp
>SRA1013015
SRR020494.69567
145761
Cyanobacteriota
GTC
Asp
>SRA1013036
SRR020494.88260
145761
Cyanobacteriota
GTC
Asp
>SRA1013050
SRR020494.103940
145761
Cyanobacteriota
GTC
Asp
>SRA1012995
SRR020494.54199
411836
Cyanobacteriota
TCC
Gly
>SRA1013031
SRR020494.83537
366531
Cyanobacteriota
TTG
Gln
>SRA1012940
SRR020494.3136
240100
Cyanobacteriota
CAT
Met
>SRA1013074
SRR020494.119521
240100
Cyanobacteriota
CAT
Met
>SRA1013000
SRR020494.55952
363933
Cyanobacteriota
GTT
Asn
>SRA1012939
SRR020494.2500
275071
Cyanobacteriota
CCA
Trp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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