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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
164 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1016083
SRR023846.341737
113638
Alphaproteobacteria
GAG
Leu
>SRA1016231
SRR023846.410173
16380
Alphaproteobacteria
GCT
Ser
>SRA1015844
SRR023846.224748
151925
Alphaproteobacteria
CGG
Pro
>SRA1015851
SRR023846.227895
109113
Alphaproteobacteria
CAG
Leu
>SRA1015391
SRR023846.40264
379822
Alphaproteobacteria
TTC
Glu
>SRA1015580
SRR023846.117646
379822
Alphaproteobacteria
TTC
Glu
>SRA1015955
SRR023846.282969
379822
Alphaproteobacteria
TTC
Glu
>SRA1016115
SRR023846.353221
379822
Alphaproteobacteria
TTC
Glu
>SRA1015725
SRR023846.173010
237580
Alphaproteobacteria
CGC
Ala
>SRA1015918
SRR023846.260340
237580
Alphaproteobacteria
CGC
Ala
>SRA1016249
SRR023846.418097
237580
Alphaproteobacteria
CGC
Ala
>SRA1015543
SRR023846.105114
148427
Alphaproteobacteria
TAC
Val
>SRA1016502
SRR023846.534024
148427
Alphaproteobacteria
TAC
Val
>SRA1016228
SRR023846.409399
289655
Alphaproteobacteria
GGC
Ala
>SRA1016400
SRR023846.479835
289655
Alphaproteobacteria
GGC
Ala
>SRA1016276
SRR023846.431452
75256
Alphaproteobacteria
CAG
Leu
>SRA1015103
SRR023845.461883
7609
Alphaproteobacteria
GCT
Ser
>SRA1015654
SRR023846.146237
7609
Alphaproteobacteria
GCT
Ser
>SRA1015384
SRR023846.38383
8002
Alphaproteobacteria
GCT
Ser
>SRA1016530
SRR023846.544874
96640
Alphaproteobacteria
CAA
Leu
>SRA1014337
SRR023845.94447
247477
Alphaproteobacteria
GTT
Asn
>SRA1015292
SRR023846.1653
247477
Alphaproteobacteria
GTT
Asn
>SRA1015942
SRR023846.274914
247477
Alphaproteobacteria
GTT
Asn
>SRA1016192
SRR023846.392926
247477
Alphaproteobacteria
GTT
Asn
>SRA1016354
SRR023846.461743
247477
Alphaproteobacteria
GTT
Asn
>SRA1014180
SRR023845.30025
162524
Alphaproteobacteria
ACG
Arg
>SRA1014306
SRR023845.83324
162524
Alphaproteobacteria
ACG
Arg
>SRA1014316
SRR023845.86860
162524
Alphaproteobacteria
ACG
Arg
>SRA1014455
SRR023845.147632
162524
Alphaproteobacteria
ACG
Arg
>SRA1014708
SRR023845.274457
162524
Alphaproteobacteria
ACG
Arg
>SRA1014709
SRR023845.274457
162524
Alphaproteobacteria
ACG
Arg
>SRA1014798
SRR023845.319092
162524
Alphaproteobacteria
ACG
Arg
>SRA1014806
SRR023845.321104
162524
Alphaproteobacteria
ACG
Arg
>SRA1014849
SRR023845.343118
162524
Alphaproteobacteria
ACG
Arg
>SRA1014939
SRR023845.390992
162524
Alphaproteobacteria
ACG
Arg
>SRA1015013
SRR023845.423620
162524
Alphaproteobacteria
ACG
Arg
>SRA1015032
SRR023845.426310
162524
Alphaproteobacteria
ACG
Arg
>SRA1015043
SRR023845.433965
162524
Alphaproteobacteria
ACG
Arg
>SRA1015107
SRR023845.463803
162524
Alphaproteobacteria
ACG
Arg
>SRA1015108
SRR023845.463803
162524
Alphaproteobacteria
ACG
Arg
>SRA1015112
SRR023845.464400
162524
Alphaproteobacteria
ACG
Arg
>SRA1015247
SRR023845.519248
162524
Alphaproteobacteria
ACG
Arg
>SRA1015473
SRR023846.77108
162524
Alphaproteobacteria
ACG
Arg
>SRA1015577
SRR023846.117294
162524
Alphaproteobacteria
ACG
Arg
>SRA1015934
SRR023846.269920
162524
Alphaproteobacteria
ACG
Arg
>SRA1016100
SRR023846.349637
162524
Alphaproteobacteria
ACG
Arg
>SRA1016343
SRR023846.459966
162524
Alphaproteobacteria
ACG
Arg
>SRA1016344
SRR023846.460208
162524
Alphaproteobacteria
ACG
Arg
>SRA1016446
SRR023846.499849
162524
Alphaproteobacteria
ACG
Arg
>SRA1014141
SRR023845.16132
144964
Alphaproteobacteria
TGG
Pro
>SRA1016168
SRR023846.377396
144964
Alphaproteobacteria
TGG
Pro
>SRA1014311
SRR023845.85090
243633
Alphaproteobacteria
CGT
Thr
>SRA1016125
SRR023846.356923
243633
Alphaproteobacteria
CGT
Thr
>SRA1014615
SRR023845.228543
236134
Alphaproteobacteria
TAC
Val
>SRA1014644
SRR023845.239045
236134
Alphaproteobacteria
TAC
Val
>SRA1015003
SRR023845.420264
236134
Alphaproteobacteria
TAC
Val
>SRA1015050
SRR023845.436617
236134
Alphaproteobacteria
TAC
Val
>SRA1015704
SRR023846.165885
236134
Alphaproteobacteria
TAC
Val
>SRA1015874
SRR023846.236775
236134
Alphaproteobacteria
TAC
Val
>SRA1016299
SRR023846.439779
236134
Alphaproteobacteria
TAC
Val
>SRA1014140
SRR023845.15966
412181
Alphaproteobacteria
CTG
Gln
>SRA1014191
SRR023845.33627
412181
Alphaproteobacteria
CTG
Gln
>SRA1014242
SRR023845.51933
412181
Alphaproteobacteria
CTG
Gln
>SRA1014393
SRR023845.118644
412181
Alphaproteobacteria
CTG
Gln
>SRA1014679
SRR023845.259184
412181
Alphaproteobacteria
CTG
Gln
>SRA1014793
SRR023845.317203
412181
Alphaproteobacteria
CTG
Gln
>SRA1014813
SRR023845.323117
412181
Alphaproteobacteria
CTG
Gln
>SRA1014896
SRR023845.368548
412181
Alphaproteobacteria
CTG
Gln
>SRA1014938
SRR023845.390602
412181
Alphaproteobacteria
CTG
Gln
>SRA1014991
SRR023845.414397
412181
Alphaproteobacteria
CTG
Gln
>SRA1014763
SRR023845.303422
412181
Alphaproteobacteria
CTG
Gln
>SRA1015400
SRR023846.44899
412181
Alphaproteobacteria
CTG
Gln
>SRA1015468
SRR023846.71578
412181
Alphaproteobacteria
CTG
Gln
>SRA1015511
SRR023846.89834
412181
Alphaproteobacteria
CTG
Gln
>SRA1015758
SRR023846.183816
412181
Alphaproteobacteria
CTG
Gln
>SRA1015873
SRR023846.236256
412181
Alphaproteobacteria
CTG
Gln
>SRA1016010
SRR023846.311520
412181
Alphaproteobacteria
CTG
Gln
>SRA1016191
SRR023846.392709
412181
Alphaproteobacteria
CTG
Gln
>SRA1015632
SRR023846.138596
294221
Alphaproteobacteria
GAA
Phe
>SRA1015807
SRR023846.207793
294221
Alphaproteobacteria
GAA
Phe
>SRA1016419
SRR023846.488727
294221
Alphaproteobacteria
GAA
Phe
>SRA1015450
SRR023846.63017
237579
Alphaproteobacteria
CTT
Lys
>SRA1015769
SRR023846.192203
237579
Alphaproteobacteria
CTT
Lys
>SRA1016185
SRR023846.387284
237579
Alphaproteobacteria
CTT
Lys
>SRA1016245
SRR023846.416888
237579
Alphaproteobacteria
CTT
Lys
>SRA1016361
SRR023846.465912
237579
Alphaproteobacteria
CTT
Lys
>SRA1015682
SRR023846.157732
108283
Alphaproteobacteria
CAA
Leu
>SRA1015822
SRR023846.212004
30071
Alphaproteobacteria
CGA
Ser
>SRA1016286
SRR023846.436351
30071
Alphaproteobacteria
CGA
Ser
>SRA1015924
SRR023846.264539
436809
Alphaproteobacteria
CTG
Gln
>SRA1016040
SRR023846.320228
339465
Alphaproteobacteria
GGT
Thr
>SRA1015465
SRR023846.70180
248021
Alphaproteobacteria
CTT
Lys
>SRA1014336
SRR023845.94116
238733
Alphaproteobacteria
CCA
Trp
>SRA1016334
SRR023846.456861
238733
Alphaproteobacteria
CCA
Trp
>SRA1016459
SRR023846.508664
238733
Alphaproteobacteria
CCA
Trp
>SRA1015780
SRR023846.197294
184120
Alphaproteobacteria
GTG
His
>SRA1015854
SRR023846.230264
184120
Alphaproteobacteria
GTG
His
>SRA1015900
SRR023846.248361
184120
Alphaproteobacteria
GTG
His
>SRA1016486
SRR023846.526333
184120
Alphaproteobacteria
GTG
His
>SRA1015244
SRR023845.517270
339516
Alphaproteobacteria
CAC
Val
>SRA1016071
SRR023846.337316
339516
Alphaproteobacteria
CAC
Val
>SRA1014791
SRR023845.316637
239095
Alphaproteobacteria
TGT
Thr
>SRA1015979
SRR023846.292388
239095
Alphaproteobacteria
TGT
Thr
>SRA1015334
SRR023846.21787
339486
Alphaproteobacteria
CCC
Gly
>SRA1015894
SRR023846.246944
23789
Alphaproteobacteria
TGA
Ser
>SRA1016222
SRR023846.407411
23789
Alphaproteobacteria
TGA
Ser
>SRA1014367
SRR023845.107123
237574
Alphaproteobacteria
TGT
Thr
>SRA1014481
SRR023845.158337
237574
Alphaproteobacteria
TGT
Thr
>SRA1014674
SRR023845.256104
237574
Alphaproteobacteria
TGT
Thr
>SRA1014756
SRR023845.300594
237574
Alphaproteobacteria
TGT
Thr
>SRA1014761
SRR023845.301851
237574
Alphaproteobacteria
TGT
Thr
>SRA1014767
SRR023845.304332
237574
Alphaproteobacteria
TGT
Thr
>SRA1014816
SRR023845.325393
237574
Alphaproteobacteria
TGT
Thr
>SRA1015016
SRR023845.423919
237574
Alphaproteobacteria
TGT
Thr
>SRA1015033
SRR023845.427639
237574
Alphaproteobacteria
TGT
Thr
>SRA1015056
SRR023845.442168
237574
Alphaproteobacteria
TGT
Thr
>SRA1015133
SRR023845.471606
237574
Alphaproteobacteria
TGT
Thr
>SRA1015546
SRR023846.106576
237574
Alphaproteobacteria
TGT
Thr
>SRA1015787
SRR023846.200785
237574
Alphaproteobacteria
TGT
Thr
>SRA1016076
SRR023846.338781
237574
Alphaproteobacteria
TGT
Thr
>SRA1016151
SRR023846.371463
237574
Alphaproteobacteria
TGT
Thr
>SRA1015526
SRR023846.97550
22312
Alphaproteobacteria
GCT
Ser
>SRA1016005
SRR023846.305932
22312
Alphaproteobacteria
GCT
Ser
>SRA1016103
SRR023846.349894
22312
Alphaproteobacteria
GCT
Ser
>SRA1016553
SRR023846.560952
22312
Alphaproteobacteria
GCT
Ser
>SRA1014197
SRR023845.35526
339454
Alphaproteobacteria
>SRA1015533
SRR023846.101278
339454
Alphaproteobacteria
>SRA1016422
SRR023846.489436
339454
Alphaproteobacteria
>SRA1014111
SRR023845.4021
417658
Alphaproteobacteria
TCC
Gly
>SRA1014272
SRR023845.66897
417658
Alphaproteobacteria
TCC
Gly
>SRA1014717
SRR023845.278298
417658
Alphaproteobacteria
TCC
Gly
>SRA1014790
SRR023845.316249
417658
Alphaproteobacteria
TCC
Gly
>SRA1015067
SRR023845.446579
417658
Alphaproteobacteria
TCC
Gly
>SRA1015740
SRR023846.177278
417658
Alphaproteobacteria
TCC
Gly
>SRA1016167
SRR023846.377201
417658
Alphaproteobacteria
TCC
Gly
>SRA1016173
SRR023846.378591
417658
Alphaproteobacteria
TCC
Gly
>SRA1016174
SRR023846.379156
417658
Alphaproteobacteria
TCC
Gly
>SRA1016258
SRR023846.422948
417658
Alphaproteobacteria
TCC
Gly
>SRA1016531
SRR023846.545059
417658
Alphaproteobacteria
TCC
Gly
>SRA1014826
SRR023845.331886
183034
Alphaproteobacteria
CCA
Trp
>SRA1015213
SRR023845.500631
146852
Alphaproteobacteria
GTC
Asp
>SRA1014736
SRR023845.288735
144971
Alphaproteobacteria
TCT
Arg
>SRA1014835
SRR023845.337195
23573
Alphaproteobacteria
GCT
Ser
>SRA1014940
SRR023845.391127
23573
Alphaproteobacteria
GCT
Ser
>SRA1014113
SRR023845.4838
349303
Alphaproteobacteria
GCC
Gly
>SRA1015173
SRR023845.487744
341164
Alphaproteobacteria
GCC
Gly
>SRA1014759
SRR023845.301707
339360
Alphaproteobacteria
>SRA1014268
SRR023845.66785
7030
Alphaproteobacteria
GCT
Ser
>SRA1014235
SRR023845.48901
350547
Alphaproteobacteria
GCC
Gly
>SRA1014966
SRR023845.400879
146965
Alphaproteobacteria
CGG
Pro
>SRA1015048
SRR023845.435741
23627
Alphaproteobacteria
GGA
Ser
>SRA1014324
SRR023845.89083
159426
Alphaproteobacteria
CAT
Met
>SRA1014110
SRR023845.3799
339514
Alphaproteobacteria
GGT
Thr
>SRA1015170
SRR023845.486421
339514
Alphaproteobacteria
GGT
Thr
>SRA1015152
SRR023845.478538
255832
Alphaproteobacteria
CGC
Ala
>SRA1015272
SRR023845.533892
255832
Alphaproteobacteria
CGC
Ala
>SRA1014447
SRR023845.146041
23620
Alphaproteobacteria
GCT
Ser
>SRA1014795
SRR023845.317725
243803
Alphaproteobacteria
CAT
Met
>SRA1014872
SRR023845.355022
338289
Alphaproteobacteria
GAC
Val
>SRA1014239
SRR023845.50393
338622
Alphaproteobacteria
GTT
Asn
>SRA1014833
SRR023845.334835
338622
Alphaproteobacteria
GTT
Asn
>SRA1015092
SRR023845.457281
144972
Alphaproteobacteria
>SRA1014204
SRR023845.38072
239295
Alphaproteobacteria
CAT
Met
>SRA1014548
SRR023845.193770
417264
Alphaproteobacteria
CTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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