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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1051687
SRR035098.58383
338288
Alphaproteobacteria
TTC
Glu
>SRA1053188
SRR035098.357932
339149
Alphaproteobacteria
GTT
Asn
>SRA1052905
SRR035098.297884
23648
Alphaproteobacteria
CGA
Ser
>SRA1053091
SRR035098.334286
23648
Alphaproteobacteria
CGA
Ser
>SRA1053162
SRR035098.350864
23648
Alphaproteobacteria
CGA
Ser
>SRA1053285
SRR035098.374291
23648
Alphaproteobacteria
CGA
Ser
>SRA1053117
SRR035098.341569
28682
Alphaproteobacteria
GGA
Ser
>SRA1051814
SRR035098.81212
147334
Alphaproteobacteria
CAT
Met
>SRA1051891
SRR035098.94958
147334
Alphaproteobacteria
CAT
Met
>SRA1053470
SRR035098.412978
147334
Alphaproteobacteria
CAT
Met
>SRA1052944
SRR035098.305163
338757
Alphaproteobacteria
GAC
Val
>SRA1051699
SRR035098.61196
413626
Alphaproteobacteria
TCC
Gly
>SRA1053099
SRR035098.337125
413626
Alphaproteobacteria
TCC
Gly
>SRA1052739
SRR035098.264886
152248
Alphaproteobacteria
TGG
Pro
>SRA1053409
SRR035098.400457
152248
Alphaproteobacteria
TGG
Pro
>SRA1053592
SRR035098.446745
152248
Alphaproteobacteria
TGG
Pro
>SRA1052073
SRR035098.135018
109657
Alphaproteobacteria
TAG
Leu
>SRA1051478
SRR035098.12273
340106
Alphaproteobacteria
GCC
Gly
>SRA1052202
SRR035098.159657
23468
Alphaproteobacteria
GCT
Ser
>SRA1052844
SRR035098.284476
23468
Alphaproteobacteria
GCT
Ser
>SRA1052040
SRR035098.128110
338283
Alphaproteobacteria
CAC
Val
>SRA1053104
SRR035098.338367
338283
Alphaproteobacteria
CAC
Val
>SRA1053902
SRR035098.532151
338283
Alphaproteobacteria
CAC
Val
>SRA1052972
SRR035098.310125
23560
Alphaproteobacteria
CGA
Ser
>SRA1052946
SRR035098.305664
147283
Alphaproteobacteria
GTG
His
>SRA1052951
SRR035098.306978
430732
Alphaproteobacteria
CCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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