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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1051615
SRR035098.38866
342872
Bacteroidota
GGT
Thr
>SRA1053626
SRR035098.456653
60370
Bacteroidota
GAG
Leu
>SRA1051661
SRR035098.52722
147106
Bacteroidota
CAT
Met
>SRA1053616
SRR035098.453024
190649
Bacteroidota
GTT
Asn
>SRA1051603
SRR035098.37139
165001
Bacteroidota
GTT
Asn
>SRA1052398
SRR035098.195651
100198
Bacteroidota
TAG
Leu
>SRA1051614
SRR035098.38866
254169
Bacteroidota
TCC
Gly
>SRA1052413
SRR035098.197755
150103
Bacteroidota
GTG
His
>SRA1053712
SRR035098.475088
145555
Bacteroidota
GTC
Asp
>SRA1053921
SRR035098.538267
145555
Bacteroidota
GTC
Asp
>SRA1051950
SRR035098.112197
432941
Bacteroidota
GCA
Cys
>SRA1052205
SRR035098.159958
432941
Bacteroidota
GCA
Cys
>SRA1053466
SRR035098.411284
139286
Bacteroidota
TGG
Pro
>SRA1053149
SRR035098.348736
414401
Bacteroidota
GCA
Cys
>SRA1053803
SRR035098.499823
414401
Bacteroidota
GCA
Cys
>SRA1053465
SRR035098.411284
13120
Bacteroidota
GCT
Ser
>SRA1053664
SRR035098.461850
259147
Bacteroidota
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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