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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170013089
ATLU01000003
179841
Alphaproteobacteria
CCT
Arg
>WENV170013369
ATLU01008630
178510
Alphaproteobacteria
ACG
Arg
>WENV170013100
ATLU01000012
446430
Alphaproteobacteria
CAC
Val
>WENV170013315
ATLU01005249
446430
Alphaproteobacteria
CAC
Val
>WENV170013285
ATLU01002861
29841
Alphaproteobacteria
GGA
Ser
>WENV170013288
ATLU01003036
29841
Alphaproteobacteria
GGA
Ser
>WENV170013138
ATLU01000054
140876
Alphaproteobacteria
>WENV170013222
ATLU01000618
140876
Alphaproteobacteria
>WENV170013081
ATLU01000001
400387
Alphaproteobacteria
GGT
Thr
>WENV170013125
ATLU01000033
140893
Alphaproteobacteria
CAA
Leu
>WENV170013171
ATLU01000165
77412
Alphaproteobacteria
CAG
Leu
>WENV170013084
ATLU01000001
73490
Alphaproteobacteria
GAG
Leu
>WENV170013339
ATLU01006320
73490
Alphaproteobacteria
GAG
Leu
>WENV170013106
ATLU01000018
179768
Alphaproteobacteria
TGG
Pro
>WENV170013086
ATLU01000001
399480
Alphaproteobacteria
GAA
Phe
>WENV170013198
ATLU01000306
399480
Alphaproteobacteria
GAA
Phe
>WENV170013110
ATLU01000025
400384
Alphaproteobacteria
TTC
Glu
>WENV170013093
ATLU01000008
180029
Alphaproteobacteria
CAT
Met
>WENV170013135
ATLU01000052
29702
Alphaproteobacteria
GGA
Ser
>WENV170013101
ATLU01000012
301916
Alphaproteobacteria
TAC
Val
>WENV170013088
ATLU01000003
340918
Alphaproteobacteria
CGT
Thr
>WENV170013192
ATLU01000256
140892
Alphaproteobacteria
TAG
Leu
>WENV170013083
ATLU01000001
179386
Alphaproteobacteria
TCT
Arg
>WENV170013109
ATLU01000024
29729
Alphaproteobacteria
GCT
Ser
>WENV170013180
ATLU01000196
197061
Alphaproteobacteria
CCT
Arg
>WENV170013166
ATLU01000127
435083
Alphaproteobacteria
>WENV170013205
ATLU01000383
435083
Alphaproteobacteria
>WENV170013300
ATLU01004044
435083
Alphaproteobacteria
>WENV170013371
ATLU01009096
178503
Alphaproteobacteria
GGG
Pro
>WENV170013130
ATLU01000048
29701
Alphaproteobacteria
CGA
Ser
>WENV170013210
ATLU01000465
283510
Alphaproteobacteria
TTT
Lys
>WENV170013168
ATLU01000150
283256
Alphaproteobacteria
CGT
Thr
>WENV170013317
ATLU01005504
283256
Alphaproteobacteria
CGT
Thr
>WENV170013143
ATLU01000061
215287
Alphaproteobacteria
GGG
Pro
>WENV170013282
ATLU01002698
178728
Alphaproteobacteria
CGG
Pro
>WENV170013204
ATLU01000371
432650
Alphaproteobacteria
GAA
Phe
>WENV170013094
ATLU01000008
398994
Alphaproteobacteria
GTT
Asn
>WENV170013124
ATLU01000033
398994
Alphaproteobacteria
GTT
Asn
>WENV170013154
ATLU01000087
398994
Alphaproteobacteria
GTT
Asn
>WENV170013283
ATLU01002780
29495
Alphaproteobacteria
GCT
Ser
>WENV170013184
ATLU01000222
281676
Alphaproteobacteria
TAC
Val
>WENV170013185
ATLU01000222
281676
Alphaproteobacteria
TAC
Val
>WENV170013225
ATLU01000659
281676
Alphaproteobacteria
TAC
Val
>WENV170013261
ATLU01001424
281676
Alphaproteobacteria
TAC
Val
>WENV170013123
ATLU01000033
178784
Alphaproteobacteria
CAT
Met
>WENV170013287
ATLU01002913
121990
Alphaproteobacteria
TAG
Leu
>WENV170013082
ATLU01000001
283255
Alphaproteobacteria
GGC
Ala
>WENV170013085
ATLU01000001
400386
Alphaproteobacteria
TTG
Gln
>WENV170013164
ATLU01000121
32370
Alphaproteobacteria
TGA
Ser
>WENV170013136
ATLU01000054
398996
Alphaproteobacteria
GCC
Gly
>WENV170013137
ATLU01000054
398996
Alphaproteobacteria
GCC
Gly
>WENV170013163
ATLU01000121
398996
Alphaproteobacteria
GCC
Gly
>WENV170013228
ATLU01000718
398996
Alphaproteobacteria
GCC
Gly
>WENV170013325
ATLU01005757
398996
Alphaproteobacteria
GCC
Gly
>WENV170013326
ATLU01005757
398996
Alphaproteobacteria
GCC
Gly
>WENV170013277
ATLU01002200
178505
Alphaproteobacteria
CCG
Arg
>WENV170013090
ATLU01000003
283257
Alphaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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