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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170055878
CDZF01025220
406043
Verrucomicrobiota
GCA
Cys
>WENV170056326
CDZF01046272
293125
Verrucomicrobiota
GAA
Phe
>WENV170055445
CDZF01005875
406350
Verrucomicrobiota
TGT
Thr
>WENV170055438
CDZF01005720
148006
Verrucomicrobiota
CAA
Leu
>WENV170055851
CDZF01023468
148006
Verrucomicrobiota
CAA
Leu
>WENV170056109
CDZF01037170
293105
Verrucomicrobiota
CAT
Met
>WENV170055810
CDZF01021696
405901
Verrucomicrobiota
GCC
Gly
>WENV170055635
CDZF01014218
405901
Verrucomicrobiota
GCC
Gly
>WENV170056329
CDZF01046272
483642
Verrucomicrobiota
CCC
Gly
>WENV170056277
CDZF01043928
229220
Verrucomicrobiota
CAT
Met
>WENV170056293
CDZF01044643
8960
Verrucomicrobiota
CGA
Ser
>WENV170055852
CDZF01023468
101463
Verrucomicrobiota
TAA
Leu
>WENV170055439
CDZF01005720
101463
Verrucomicrobiota
TAA
Leu
>WENV170056309
CDZF01045060
157427
Verrucomicrobiota
GTC
Asp
>WENV170055614
CDZF01013517
157427
Verrucomicrobiota
GTC
Asp
>WENV170056086
CDZF01036060
293079
Verrucomicrobiota
CGC
Ala
>WENV170055316
CDZF01002013
120352
Verrucomicrobiota
TAG
Leu
>WENV170055853
CDZF01023468
292636
Verrucomicrobiota
>WENV170055440
CDZF01005720
292636
Verrucomicrobiota
>WENV170055550
CDZF01009956
293069
Verrucomicrobiota
CTT
Lys
>WENV170056054
CDZF01033876
406336
Verrucomicrobiota
CCT
Arg
>WENV170056330
CDZF01046272
406369
Verrucomicrobiota
CCG
Arg
>WENV170055721
CDZF01017694
405940
Verrucomicrobiota
GGT
Thr
>WENV170056184
CDZF01039884
406044
Verrucomicrobiota
CTG
Gln
>WENV170056328
CDZF01046272
187556
Verrucomicrobiota
GGG
Pro
>WENV170056108
CDZF01037170
406037
Verrucomicrobiota
GTG
His
>WENV170055307
CDZF01001621
406360
Verrucomicrobiota
GAC
Val
>WENV170055751
CDZF01019157
187548
Verrucomicrobiota
TCT
Arg
>WENV170056016
CDZF01031841
406040
Verrucomicrobiota
CGT
Thr
>WENV170055951
CDZF01028971
57652
Verrucomicrobiota
TGA
Ser
>WENV170056393
CDZF01048520
406039
Verrucomicrobiota
CAC
Val
>WENV170056349
CDZF01047090
406039
Verrucomicrobiota
CAC
Val
>WENV170055723
CDZF01017696
75458
Verrucomicrobiota
CAG
Leu
>WENV170055479
CDZF01007100
406368
Verrucomicrobiota
TTG
Gln
>WENV170055882
CDZF01025222
101461
Verrucomicrobiota
GTA
Tyr
>WENV170056264
CDZF01043529
293095
Verrucomicrobiota
TTT
Lys
>WENV170055629
CDZF01013931
187561
Verrucomicrobiota
CGG
Pro
>WENV170055636
CDZF01014218
406342
Verrucomicrobiota
CAT
Met
>WENV170056185
CDZF01039884
406351
Verrucomicrobiota
GTT
Asn
>WENV170055871
CDZF01024877
406346
Verrucomicrobiota
TAC
Val
>WENV170055854
CDZF01023468
8938
Verrucomicrobiota
GCT
Ser
>WENV170055441
CDZF01005720
8938
Verrucomicrobiota
GCT
Ser
>WENV170056327
CDZF01046272
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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