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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170059649
CDZH01056015
406043
Verrucomicrobiota
GCA
Cys
>WENV170059163
CDZH01036581
293125
Verrucomicrobiota
GAA
Phe
>WENV170059651
CDZH01056015
406350
Verrucomicrobiota
TGT
Thr
>WENV170059153
CDZH01036581
148006
Verrucomicrobiota
CAA
Leu
>WENV170059648
CDZH01056015
101600
Verrucomicrobiota
AAG
Leu
>WENV170060313
CDZH01082676
293105
Verrucomicrobiota
CAT
Met
>WENV170060310
CDZH01082676
405901
Verrucomicrobiota
GCC
Gly
>WENV170059612
CDZH01055360
405901
Verrucomicrobiota
GCC
Gly
>WENV170059156
CDZH01036581
483642
Verrucomicrobiota
CCC
Gly
>WENV170060125
CDZH01075237
229220
Verrucomicrobiota
CAT
Met
>WENV170059173
CDZH01036590
8960
Verrucomicrobiota
CGA
Ser
>WENV170059166
CDZH01036581
101463
Verrucomicrobiota
TAA
Leu
>WENV170058370
CDZH01005359
157427
Verrucomicrobiota
GTC
Asp
>WENV170059158
CDZH01036581
157427
Verrucomicrobiota
GTC
Asp
>WENV170059652
CDZH01056015
293079
Verrucomicrobiota
CGC
Ala
>WENV170059154
CDZH01036581
120352
Verrucomicrobiota
TAG
Leu
>WENV170059167
CDZH01036581
292636
Verrucomicrobiota
>WENV170060311
CDZH01082676
298263
Verrucomicrobiota
TTC
Glu
>WENV170059650
CDZH01056015
298263
Verrucomicrobiota
TTC
Glu
>WENV170059660
CDZH01056017
293069
Verrucomicrobiota
CTT
Lys
>WENV170059659
CDZH01056017
293069
Verrucomicrobiota
CTT
Lys
>WENV170059658
CDZH01056017
293069
Verrucomicrobiota
CTT
Lys
>WENV170058540
CDZH01013316
293069
Verrucomicrobiota
CTT
Lys
>WENV170058539
CDZH01013316
293069
Verrucomicrobiota
CTT
Lys
>WENV170058538
CDZH01013316
293069
Verrucomicrobiota
CTT
Lys
>WENV170059165
CDZH01036581
406336
Verrucomicrobiota
CCT
Arg
>WENV170059157
CDZH01036581
406369
Verrucomicrobiota
CCG
Arg
>WENV170059209
CDZH01037999
405940
Verrucomicrobiota
GGT
Thr
>WENV170058367
CDZH01005359
406044
Verrucomicrobiota
CTG
Gln
>WENV170059155
CDZH01036581
187556
Verrucomicrobiota
GGG
Pro
>WENV170060312
CDZH01082676
406037
Verrucomicrobiota
GTG
His
>WENV170058368
CDZH01005359
406360
Verrucomicrobiota
GAC
Val
>WENV170059161
CDZH01036581
187548
Verrucomicrobiota
TCT
Arg
>WENV170059657
CDZH01056017
406040
Verrucomicrobiota
CGT
Thr
>WENV170060309
CDZH01082676
57652
Verrucomicrobiota
TGA
Ser
>WENV170059611
CDZH01055360
406039
Verrucomicrobiota
CAC
Val
>WENV170059703
CDZH01057976
406368
Verrucomicrobiota
TTG
Gln
>WENV170059159
CDZH01036581
21159
Verrucomicrobiota
GGA
Ser
>WENV170060124
CDZH01075237
101461
Verrucomicrobiota
GTA
Tyr
>WENV170059160
CDZH01036581
293095
Verrucomicrobiota
TTT
Lys
>WENV170059656
CDZH01056017
187561
Verrucomicrobiota
CGG
Pro
>WENV170060314
CDZH01082676
406342
Verrucomicrobiota
CAT
Met
>WENV170060123
CDZH01075237
406351
Verrucomicrobiota
GTT
Asn
>WENV170059610
CDZH01055360
303305
Verrucomicrobiota
GGC
Ala
>WENV170059162
CDZH01036581
507474
Verrucomicrobiota
TCC
Gly
>WENV170058369
CDZH01005359
406346
Verrucomicrobiota
TAC
Val
>WENV170059168
CDZH01036581
8938
Verrucomicrobiota
GCT
Ser
>WENV170059164
CDZH01036581
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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