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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170067321
CDZO01008091
406043
Verrucomicrobiota
GCA
Cys
>WENV170067596
CDZO01017954
293125
Verrucomicrobiota
GAA
Phe
>WENV170067323
CDZO01008091
406350
Verrucomicrobiota
TGT
Thr
>WENV170067591
CDZO01017954
148006
Verrucomicrobiota
CAA
Leu
>WENV170067836
CDZO01026601
101600
Verrucomicrobiota
AAG
Leu
>WENV170067387
CDZO01010366
293105
Verrucomicrobiota
CAT
Met
>WENV170068048
CDZO01033392
405901
Verrucomicrobiota
GCC
Gly
>WENV170067691
CDZO01022366
405901
Verrucomicrobiota
GCC
Gly
>WENV170067594
CDZO01017954
483642
Verrucomicrobiota
CCC
Gly
>WENV170068089
CDZO01034757
229220
Verrucomicrobiota
CAT
Met
>WENV170067166
CDZO01003230
8960
Verrucomicrobiota
CGA
Ser
>WENV170067599
CDZO01017954
101463
Verrucomicrobiota
TAA
Leu
>WENV170067813
CDZO01026204
157427
Verrucomicrobiota
GTC
Asp
>WENV170067464
CDZO01013261
157427
Verrucomicrobiota
GTC
Asp
>WENV170067324
CDZO01008091
293079
Verrucomicrobiota
CGC
Ala
>WENV170067592
CDZO01017954
120352
Verrucomicrobiota
TAG
Leu
>WENV170067600
CDZO01017954
292636
Verrucomicrobiota
>WENV170067385
CDZO01010366
298263
Verrucomicrobiota
TTC
Glu
>WENV170067322
CDZO01008091
298263
Verrucomicrobiota
TTC
Glu
>WENV170067284
CDZO01007080
293069
Verrucomicrobiota
CTT
Lys
>WENV170067283
CDZO01007080
293069
Verrucomicrobiota
CTT
Lys
>WENV170067598
CDZO01017954
406336
Verrucomicrobiota
CCT
Arg
>WENV170067811
CDZO01026203
406369
Verrucomicrobiota
CCG
Arg
>WENV170068209
CDZO01039229
405940
Verrucomicrobiota
GGT
Thr
>WENV170067812
CDZO01026204
406044
Verrucomicrobiota
CTG
Gln
>WENV170067593
CDZO01017954
187556
Verrucomicrobiota
GGG
Pro
>WENV170067386
CDZO01010366
406037
Verrucomicrobiota
GTG
His
>WENV170068181
CDZO01038190
406360
Verrucomicrobiota
GAC
Val
>WENV170067463
CDZO01013261
187548
Verrucomicrobiota
TCT
Arg
>WENV170067282
CDZO01007080
406040
Verrucomicrobiota
CGT
Thr
>WENV170068047
CDZO01033392
57652
Verrucomicrobiota
TGA
Ser
>WENV170067690
CDZO01022366
406039
Verrucomicrobiota
CAC
Val
>WENV170067360
CDZO01009582
75458
Verrucomicrobiota
CAG
Leu
>WENV170067692
CDZO01022366
406368
Verrucomicrobiota
TTG
Gln
>WENV170068088
CDZO01034757
21159
Verrucomicrobiota
GGA
Ser
>WENV170067394
CDZO01010700
101461
Verrucomicrobiota
GTA
Tyr
>WENV170067462
CDZO01013261
293095
Verrucomicrobiota
TTT
Lys
>WENV170067281
CDZO01007080
187561
Verrucomicrobiota
CGG
Pro
>WENV170068049
CDZO01033392
406342
Verrucomicrobiota
CAT
Met
>WENV170067393
CDZO01010700
406351
Verrucomicrobiota
GTT
Asn
>WENV170067689
CDZO01022366
303305
Verrucomicrobiota
GGC
Ala
>WENV170067595
CDZO01017954
507474
Verrucomicrobiota
TCC
Gly
>WENV170068182
CDZO01038190
406346
Verrucomicrobiota
TAC
Val
>WENV170067601
CDZO01017954
8938
Verrucomicrobiota
GCT
Ser
>WENV170067597
CDZO01017954
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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