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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170475435
CEVI01000265
232119
Gammaproteobacteria
ACG
Arg
>WENV170475456
CEVI01001901
176545
Gammaproteobacteria
CAT
Met
>WENV170475463
CEVI01002442
178164
Gammaproteobacteria
GAT
Ile
>WENV170475466
CEVI01002574
299227
Gammaproteobacteria
GTT
Asn
>WENV170475484
CEVI01004418
282550
Gammaproteobacteria
TAC
Val
>WENV170475515
CEVI01007086
297858
Gammaproteobacteria
TGC
Ala
>WENV170475527
CEVI01008222
197498
Gammaproteobacteria
TGG
Pro
>WENV170475548
CEVI01011631
20618
Gammaproteobacteria
GGA
Ser
>WENV170475561
CEVI01012591
282902
Gammaproteobacteria
TGT
Thr
>WENV170475563
CEVI01012591
481325
Gammaproteobacteria
TCC
Gly
>WENV170475625
CEVI01018106
178466
Gammaproteobacteria
CCA
Trp
>WENV170475653
CEVI01020993
180680
Gammaproteobacteria
GAC
Val
>WENV170475661
CEVI01021792
315775
Gammaproteobacteria
TGT
Thr
>WENV170475671
CEVI01022585
353123
Gammaproteobacteria
CCA
Trp
>WENV170475687
CEVI01024339
180679
Gammaproteobacteria
CCA
Trp
>WENV170475697
CEVI01025302
20618
Gammaproteobacteria
GGA
Ser
>WENV170475706
CEVI01026531
178473
Gammaproteobacteria
TGG
Pro
>WENV170475707
CEVI01026531
184230
Gammaproteobacteria
TCT
Arg
>WENV170475744
CEVI01028265
118413
Gammaproteobacteria
TAG
Leu
>WENV170475785
CEVI01033052
481314
Gammaproteobacteria
GCA
Cys
>WENV170475793
CEVI01033556
179189
Gammaproteobacteria
CAT
Met
>WENV170475797
CEVI01034800
306288
Gammaproteobacteria
GCC
Gly
>WENV170475822
CEVI01037631
74339
Gammaproteobacteria
GAG
Leu
>WENV170475843
CEVI01040436
183804
Gammaproteobacteria
CAT
Met
>WENV170475856
CEVI01041915
183804
Gammaproteobacteria
CAT
Met
>WENV170475863
CEVI01043110
8609
Gammaproteobacteria
GCT
Ser
>WENV170475864
CEVI01043110
178583
Gammaproteobacteria
ACG
Arg
>WENV170475907
CEVI01048997
329164
Gammaproteobacteria
TTT
Lys
>WENV170475953
CEVI01053174
176665
Gammaproteobacteria
CGG
Pro
>WENV170476011
CEVI01059989
186591
Gammaproteobacteria
ACG
Arg
>WENV170476012
CEVI01059989
186591
Gammaproteobacteria
ACG
Arg
>WENV170476076
CEVI01068719
444310
Gammaproteobacteria
TTG
Gln
>WENV170476111
CEVI01072961
313852
Gammaproteobacteria
TTC
Glu
>WENV170476148
CEVI01075840
13452
Gammaproteobacteria
GCT
Ser
>WENV170476198
CEVI01082016
20487
Gammaproteobacteria
TGA
Ser
>WENV170476199
CEVI01082337
177028
Gammaproteobacteria
CAT
Met
>WENV170476230
CEVI01087657
180679
Gammaproteobacteria
CCA
Trp
>WENV170476270
CEVI01091825
20618
Gammaproteobacteria
GGA
Ser
>WENV170476286
CEVI01094025
178549
Gammaproteobacteria
GTT
Asn
>WENV170476291
CEVI01094192
180681
Gammaproteobacteria
TGG
Pro
>WENV170476307
CEVI01094803
141076
Gammaproteobacteria
GTA
Tyr
>WENV170476315
CEVI01095389
284706
Gammaproteobacteria
GTT
Asn
>WENV170476376
CEVI01105026
180053
Gammaproteobacteria
CAT
Met
>WENV170476425
CEVI01109124
178469
Gammaproteobacteria
CAT
Met
>WENV170476433
CEVI01110249
56694
Gammaproteobacteria
GGA
Ser
>WENV170476460
CEVI01113539
242732
Gammaproteobacteria
ACG
Arg
>WENV170476518
CEVI01118647
353123
Gammaproteobacteria
CCA
Trp
>WENV170476532
CEVI01120273
351236
Gammaproteobacteria
TTT
Lys
>WENV170476564
CEVI01122925
283966
Gammaproteobacteria
CCT
Arg
>WENV170476756
CEVI01197939
286980
Gammaproteobacteria
TTT
Lys
>WENV170476819
CEVI01217930
181513
Gammaproteobacteria
TGG
Pro
>WENV170476852
CEVI01225596
480516
Gammaproteobacteria
GCA
Cys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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