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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170478183
CEVK01021191
360947
Alphaproteobacteria
TTT
Lys
>WENV170479130
CEVK01181236
399001
Alphaproteobacteria
GAC
Val
>WENV170479062
CEVK01161433
207217
Alphaproteobacteria
CCG
Arg
>WENV170478985
CEVK01129449
401056
Alphaproteobacteria
TTC
Glu
>WENV170478669
CEVK01079297
400518
Alphaproteobacteria
GAA
Phe
>WENV170478970
CEVK01120341
195445
Alphaproteobacteria
CAT
Met
>WENV170478850
CEVK01100851
288727
Alphaproteobacteria
>WENV170478536
CEVK01062088
193088
Alphaproteobacteria
GAT
Ile
>WENV170478519
CEVK01059355
509917
Alphaproteobacteria
TCC
Gly
>WENV170478274
CEVK01030887
400516
Alphaproteobacteria
TTG
Gln
>WENV170478131
CEVK01015148
280784
Alphaproteobacteria
TGC
Ala
>WENV170479253
CEVK01212302
75222
Alphaproteobacteria
GAG
Leu
>WENV170478404
CEVK01044871
486348
Alphaproteobacteria
GCA
Cys
>WENV170478275
CEVK01031074
178734
Alphaproteobacteria
TGG
Pro
>WENV170478722
CEVK01085297
408543
Alphaproteobacteria
GAC
Val
>WENV170478128
CEVK01014719
427571
Alphaproteobacteria
GCC
Gly
>WENV170478210
CEVK01024476
192131
Alphaproteobacteria
GTC
Asp
>WENV170478338
CEVK01036454
73986
Alphaproteobacteria
CAG
Leu
>WENV170478114
CEVK01013328
192275
Alphaproteobacteria
GTG
His
>WENV170478124
CEVK01014280
192275
Alphaproteobacteria
GTG
His
>WENV170478931
CEVK01107617
192275
Alphaproteobacteria
GTG
His
>WENV170478246
CEVK01027583
398998
Alphaproteobacteria
TTG
Gln
>WENV170478667
CEVK01079066
400517
Alphaproteobacteria
GGT
Thr
>WENV170478547
CEVK01063619
400517
Alphaproteobacteria
GGT
Thr
>WENV170478899
CEVK01105461
481098
Alphaproteobacteria
CTG
Gln
>WENV170478527
CEVK01060808
190625
Alphaproteobacteria
ACG
Arg
>WENV170478118
CEVK01013787
282658
Alphaproteobacteria
CGT
Thr
>WENV170478517
CEVK01059203
400515
Alphaproteobacteria
GAC
Val
>WENV170478906
CEVK01105886
178736
Alphaproteobacteria
CCT
Arg
>WENV170478750
CEVK01088204
398994
Alphaproteobacteria
GTT
Asn
>WENV170479042
CEVK01152097
400106
Alphaproteobacteria
GTT
Asn
>WENV170478429
CEVK01048628
481099
Alphaproteobacteria
TCC
Gly
>WENV170478856
CEVK01101686
428327
Alphaproteobacteria
GCC
Gly
>WENV170478489
CEVK01056592
480900
Alphaproteobacteria
GCA
Cys
>WENV170479088
CEVK01168243
400386
Alphaproteobacteria
TTG
Gln
>WENV170478999
CEVK01133038
29739
Alphaproteobacteria
CGA
Ser
>WENV170478537
CEVK01062088
338616
Alphaproteobacteria
TGC
Ala
>WENV170479124
CEVK01179872
332802
Alphaproteobacteria
GGC
Ala
>WENV170478892
CEVK01105132
13340
Alphaproteobacteria
GCT
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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