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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170646045
JQGF01014964
400188
Alphaproteobacteria
CCC
Gly
>WENV170645951
JQGF01001819
482973
Alphaproteobacteria
TCC
Gly
>WENV170645948
JQGF01001491
9951
Alphaproteobacteria
GCT
Ser
>WENV170645927
JQGF01000911
178198
Alphaproteobacteria
TTT
Lys
>WENV170646011
JQGF01006397
282924
Alphaproteobacteria
CGC
Ala
>WENV170645935
JQGF01001180
78800
Alphaproteobacteria
CAG
Leu
>WENV170645908
JQGF01000351
427571
Alphaproteobacteria
GCC
Gly
>WENV170645994
JQGF01004452
178197
Alphaproteobacteria
CAT
Met
>WENV170645938
JQGF01001230
400186
Alphaproteobacteria
GTT
Asn
>WENV170645912
JQGF01000528
324019
Alphaproteobacteria
TGC
Ala
>WENV170646023
JQGF01009021
282923
Alphaproteobacteria
CTT
Lys
>WENV170645977
JQGF01002910
29645
Alphaproteobacteria
CGA
Ser
>WENV170646016
JQGF01007144
178196
Alphaproteobacteria
GTG
His
>WENV170646133
JQGF01112592
290521
Alphaproteobacteria
GAA
Phe
>WENV170646007
JQGF01006261
480946
Alphaproteobacteria
TTG
Gln
>WENV170646009
JQGF01006263
480946
Alphaproteobacteria
TTG
Gln
>WENV170646000
JQGF01005674
13311
Alphaproteobacteria
GCT
Ser
>WENV170645909
JQGF01000391
118136
Alphaproteobacteria
CAA
Leu
>WENV170645988
JQGF01003817
118136
Alphaproteobacteria
CAA
Leu
>WENV170646042
JQGF01014200
209657
Alphaproteobacteria
TAC
Val
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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