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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170749458
LUMF01000076
158246
Gammaproteobacteria
GTC
Asp
>WENV170749894
LUMF01017831
20618
Gammaproteobacteria
GGA
Ser
>WENV170749585
LUMF01001876
284022
Gammaproteobacteria
TGT
Thr
>WENV170749906
LUMF01018549
284022
Gammaproteobacteria
TGT
Thr
>WENV170749724
LUMF01006103
221668
Gammaproteobacteria
ACG
Arg
>WENV170749723
LUMF01006103
13452
Gammaproteobacteria
GCT
Ser
>WENV170749850
LUMF01014537
480629
Gammaproteobacteria
GCA
Cys
>WENV170749649
LUMF01003454
401684
Gammaproteobacteria
CCT
Arg
>WENV170749913
LUMF01019205
176544
Gammaproteobacteria
CAT
Met
>WENV170749579
LUMF01001788
176301
Gammaproteobacteria
GAT
Ile
>WENV170749912
LUMF01019205
285547
Gammaproteobacteria
TTG
Gln
>WENV170749735
LUMF01006696
285547
Gammaproteobacteria
TTG
Gln
>WENV170749915
LUMF01019205
180681
Gammaproteobacteria
TGG
Pro
>WENV170749914
LUMF01019205
118640
Gammaproteobacteria
TAG
Leu
>WENV170749725
LUMF01006152
180679
Gammaproteobacteria
CCA
Trp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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