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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
113 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170793843
MDSV01123078
282894
Gammaproteobacteria
GAA
Phe
>WENV170794096
MDSV01126699
284706
Gammaproteobacteria
GTT
Asn
>WENV170797729
MDSV01185311
284706
Gammaproteobacteria
GTT
Asn
>WENV170789878
MDSV01056935
158246
Gammaproteobacteria
GTC
Asp
>WENV170790164
MDSV01061670
158246
Gammaproteobacteria
GTC
Asp
>WENV170799090
MDSV01207471
281908
Gammaproteobacteria
GTG
His
>WENV170794074
MDSV01126264
209464
Gammaproteobacteria
CCG
Arg
>WENV170788393
MDSV01032871
20664
Gammaproteobacteria
GCT
Ser
>WENV170796454
MDSV01164313
299414
Gammaproteobacteria
TTT
Lys
>WENV170801497
MDSV01248035
281437
Gammaproteobacteria
CCA
Trp
>WENV170790850
MDSV01072719
21927
Gammaproteobacteria
GGA
Ser
>WENV170792139
MDSV01094834
399352
Gammaproteobacteria
GCC
Gly
>WENV170797345
MDSV01178863
287037
Gammaproteobacteria
GTG
His
>WENV170794313
MDSV01130134
20618
Gammaproteobacteria
GGA
Ser
>WENV170792819
MDSV01105633
480653
Gammaproteobacteria
GCA
Cys
>WENV170793020
MDSV01109139
20407
Gammaproteobacteria
TGA
Ser
>WENV170794964
MDSV01140296
176795
Gammaproteobacteria
CAT
Met
>WENV170794031
MDSV01125628
282550
Gammaproteobacteria
TAC
Val
>WENV170795189
MDSV01144236
329164
Gammaproteobacteria
TTT
Lys
>WENV170797872
MDSV01187736
178471
Gammaproteobacteria
GTT
Asn
>WENV170786834
MDSV01009140
178471
Gammaproteobacteria
GTT
Asn
>WENV170786939
MDSV01010798
178471
Gammaproteobacteria
GTT
Asn
>WENV170793396
MDSV01115526
178471
Gammaproteobacteria
GTT
Asn
>WENV170793397
MDSV01115526
178471
Gammaproteobacteria
GTT
Asn
>WENV170786437
MDSV01003209
176790
Gammaproteobacteria
ACG
Arg
>WENV170792202
MDSV01096076
351236
Gammaproteobacteria
TTT
Lys
>WENV170796091
MDSV01158859
292006
Gammaproteobacteria
TGC
Ala
>WENV170791382
MDSV01081894
73146
Gammaproteobacteria
TAA
Leu
>WENV170799435
MDSV01213545
181513
Gammaproteobacteria
TGG
Pro
>WENV170791840
MDSV01089663
181513
Gammaproteobacteria
TGG
Pro
>WENV170793005
MDSV01108779
242732
Gammaproteobacteria
ACG
Arg
>WENV170790865
MDSV01072904
243308
Gammaproteobacteria
TGG
Pro
>WENV170786659
MDSV01006761
243308
Gammaproteobacteria
TGG
Pro
>WENV170790763
MDSV01071542
197498
Gammaproteobacteria
TGG
Pro
>WENV170791218
MDSV01079181
508107
Gammaproteobacteria
GCA
Cys
>WENV170796322
MDSV01162648
291402
Gammaproteobacteria
GTG
His
>WENV170790182
MDSV01061906
92638
Gammaproteobacteria
TAA
Leu
>WENV170795381
MDSV01147748
92638
Gammaproteobacteria
TAA
Leu
>WENV170793923
MDSV01124168
176791
Gammaproteobacteria
TGG
Pro
>WENV170798849
MDSV01203447
176545
Gammaproteobacteria
CAT
Met
>WENV170795803
MDSV01154279
176545
Gammaproteobacteria
CAT
Met
>WENV170786436
MDSV01003209
30083
Gammaproteobacteria
GCT
Ser
>WENV170796285
MDSV01162090
179888
Gammaproteobacteria
ACG
Arg
>WENV170791317
MDSV01080863
179888
Gammaproteobacteria
ACG
Arg
>WENV170797320
MDSV01178448
401684
Gammaproteobacteria
CCT
Arg
>WENV170800780
MDSV01235950
178169
Gammaproteobacteria
GAC
Val
>WENV170799583
MDSV01215941
178169
Gammaproteobacteria
GAC
Val
>WENV170793925
MDSV01124168
281433
Gammaproteobacteria
GTG
His
>WENV170788394
MDSV01032871
232119
Gammaproteobacteria
ACG
Arg
>WENV170787275
MDSV01016031
232119
Gammaproteobacteria
ACG
Arg
>WENV170799669
MDSV01217497
232119
Gammaproteobacteria
ACG
Arg
>WENV170794408
MDSV01131801
232119
Gammaproteobacteria
ACG
Arg
>WENV170786918
MDSV01010432
282922
Gammaproteobacteria
GAA
Phe
>WENV170792651
MDSV01103176
74048
Gammaproteobacteria
CAA
Leu
>WENV170795134
MDSV01143071
306288
Gammaproteobacteria
GCC
Gly
>WENV170794998
MDSV01140972
302111
Gammaproteobacteria
GTT
Asn
>WENV170794231
MDSV01128840
242775
Gammaproteobacteria
TGG
Pro
>WENV170786845
MDSV01009310
242775
Gammaproteobacteria
TGG
Pro
>WENV170795007
MDSV01141150
287558
Gammaproteobacteria
TTC
Glu
>WENV170798666
MDSV01200566
398943
Gammaproteobacteria
GAC
Val
>WENV170791953
MDSV01091616
334421
Gammaproteobacteria
TGT
Thr
>WENV170794015
MDSV01125475
346373
Gammaproteobacteria
GAA
Phe
>WENV170801621
MDSV01249770
346373
Gammaproteobacteria
GAA
Phe
>WENV170788073
MDSV01027242
177028
Gammaproteobacteria
CAT
Met
>WENV170794954
MDSV01140210
177028
Gammaproteobacteria
CAT
Met
>WENV170793176
MDSV01111845
488965
Gammaproteobacteria
GCA
Cys
>WENV170791340
MDSV01081181
488965
Gammaproteobacteria
GCA
Cys
>WENV170789343
MDSV01048731
488965
Gammaproteobacteria
GCA
Cys
>WENV170801507
MDSV01248221
488965
Gammaproteobacteria
GCA
Cys
>WENV170797265
MDSV01177874
488965
Gammaproteobacteria
GCA
Cys
>WENV170788024
MDSV01026517
176544
Gammaproteobacteria
CAT
Met
>WENV170791515
MDSV01084567
370389
Gammaproteobacteria
GGC
Ala
>WENV170800783
MDSV01236040
370389
Gammaproteobacteria
GGC
Ala
>WENV170798223
MDSV01193255
370389
Gammaproteobacteria
GGC
Ala
>WENV170797489
MDSV01181252
370389
Gammaproteobacteria
GGC
Ala
>WENV170794050
MDSV01125855
370389
Gammaproteobacteria
GGC
Ala
>WENV170795770
MDSV01153819
370389
Gammaproteobacteria
GGC
Ala
>WENV170789948
MDSV01058137
176068
Gammaproteobacteria
TGG
Pro
>WENV170787334
MDSV01016977
180680
Gammaproteobacteria
GAC
Val
>WENV170787192
MDSV01014741
180680
Gammaproteobacteria
GAC
Val
>WENV170786674
MDSV01006961
176301
Gammaproteobacteria
GAT
Ile
>WENV170796240
MDSV01161295
176301
Gammaproteobacteria
GAT
Ile
>WENV170789476
MDSV01050722
89769
Gammaproteobacteria
CAG
Leu
>WENV170799431
MDSV01213455
180678
Gammaproteobacteria
CCG
Arg
>WENV170795453
MDSV01148954
176665
Gammaproteobacteria
CGG
Pro
>WENV170796944
MDSV01172046
281434
Gammaproteobacteria
GTT
Asn
>WENV170790673
MDSV01069960
281434
Gammaproteobacteria
GTT
Asn
>WENV170793924
MDSV01124168
176792
Gammaproteobacteria
TCT
Arg
>WENV170792268
MDSV01096869
120822
Gammaproteobacteria
GAG
Leu
>WENV170787333
MDSV01016977
285547
Gammaproteobacteria
TTG
Gln
>WENV170788023
MDSV01026517
285547
Gammaproteobacteria
TTG
Gln
>WENV170799092
MDSV01207471
180681
Gammaproteobacteria
TGG
Pro
>WENV170795180
MDSV01144056
180681
Gammaproteobacteria
TGG
Pro
>WENV170798767
MDSV01201937
180681
Gammaproteobacteria
TGG
Pro
>WENV170801438
MDSV01247203
282018
Gammaproteobacteria
TGT
Thr
>WENV170799694
MDSV01217892
282018
Gammaproteobacteria
TGT
Thr
>WENV170798243
MDSV01193490
282018
Gammaproteobacteria
TGT
Thr
>WENV170786709
MDSV01007375
179710
Gammaproteobacteria
GAC
Val
>WENV170790518
MDSV01067586
179710
Gammaproteobacteria
GAC
Val
>WENV170799091
MDSV01207471
118640
Gammaproteobacteria
TAG
Leu
>WENV170794073
MDSV01126264
141076
Gammaproteobacteria
GTA
Tyr
>WENV170787529
MDSV01019766
342077
Gammaproteobacteria
TAC
Val
>WENV170800304
MDSV01227814
186591
Gammaproteobacteria
ACG
Arg
>WENV170800664
MDSV01234150
74110
Gammaproteobacteria
CAA
Leu
>WENV170792103
MDSV01094175
74110
Gammaproteobacteria
CAA
Leu
>WENV170789307
MDSV01048280
180679
Gammaproteobacteria
CCA
Trp
>WENV170800979
MDSV01239174
180679
Gammaproteobacteria
CCA
Trp
>WENV170800580
MDSV01232574
180679
Gammaproteobacteria
CCA
Trp
>WENV170800523
MDSV01231661
180679
Gammaproteobacteria
CCA
Trp
>WENV170799541
MDSV01215233
180679
Gammaproteobacteria
CCA
Trp
>WENV170799278
MDSV01210747
179189
Gammaproteobacteria
CAT
Met
>WENV170798322
MDSV01194708
283486
Gammaproteobacteria
TGT
Thr
>WENV170801376
MDSV01245912
283486
Gammaproteobacteria
TGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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