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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
87 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170807685
MDSW01102718
360947
Alphaproteobacteria
TTT
Lys
>WENV170809627
MDSW01135723
360947
Alphaproteobacteria
TTT
Lys
>WENV170812850
MDSW01190244
360947
Alphaproteobacteria
TTT
Lys
>WENV170813886
MDSW01207986
360947
Alphaproteobacteria
TTT
Lys
>WENV170803296
MDSW01027831
179841
Alphaproteobacteria
CCT
Arg
>WENV170803455
MDSW01030124
178510
Alphaproteobacteria
ACG
Arg
>WENV170814594
MDSW01219744
399001
Alphaproteobacteria
GAC
Val
>WENV170806821
MDSW01087763
179639
Alphaproteobacteria
ACG
Arg
>WENV170806133
MDSW01077263
143406
Alphaproteobacteria
TAG
Leu
>WENV170811848
MDSW01173814
400694
Alphaproteobacteria
TTG
Gln
>WENV170801713
MDSW01000958
334086
Alphaproteobacteria
GGC
Ala
>WENV170810074
MDSW01142905
176146
Alphaproteobacteria
CAT
Met
>WENV170804431
MDSW01047458
140876
Alphaproteobacteria
>WENV170802945
MDSW01022134
400387
Alphaproteobacteria
GGT
Thr
>WENV170807918
MDSW01106310
492874
Alphaproteobacteria
CCC
Gly
>WENV170808319
MDSW01112984
201940
Alphaproteobacteria
CAT
Met
>WENV170811887
MDSW01174273
201940
Alphaproteobacteria
CAT
Met
>WENV170812829
MDSW01189934
201940
Alphaproteobacteria
CAT
Met
>WENV170807005
MDSW01091117
77412
Alphaproteobacteria
CAG
Leu
>WENV170811154
MDSW01161654
197241
Alphaproteobacteria
GGG
Pro
>WENV170804173
MDSW01042803
197241
Alphaproteobacteria
GGG
Pro
>WENV170813393
MDSW01199398
481268
Alphaproteobacteria
TCC
Gly
>WENV170812058
MDSW01176858
481268
Alphaproteobacteria
TCC
Gly
>WENV170808751
MDSW01120580
481268
Alphaproteobacteria
TCC
Gly
>WENV170814119
MDSW01211866
280788
Alphaproteobacteria
TTT
Lys
>WENV170802077
MDSW01007076
283601
Alphaproteobacteria
CGT
Thr
>WENV170809517
MDSW01133571
179768
Alphaproteobacteria
TGG
Pro
>WENV170802812
MDSW01019965
314617
Alphaproteobacteria
TAC
Val
>WENV170804558
MDSW01049666
75222
Alphaproteobacteria
GAG
Leu
>WENV170806365
MDSW01080769
78115
Alphaproteobacteria
GAG
Leu
>WENV170802838
MDSW01020162
234690
Alphaproteobacteria
CGG
Pro
>WENV170814317
MDSW01214702
400514
Alphaproteobacteria
TTG
Gln
>WENV170814696
MDSW01221485
29702
Alphaproteobacteria
GGA
Ser
>WENV170808202
MDSW01110938
179941
Alphaproteobacteria
CAT
Met
>WENV170813224
MDSW01196246
283596
Alphaproteobacteria
TTC
Glu
>WENV170809726
MDSW01137074
32398
Alphaproteobacteria
CGA
Ser
>WENV170814426
MDSW01216862
436046
Alphaproteobacteria
GAC
Val
>WENV170811242
MDSW01163287
73986
Alphaproteobacteria
CAG
Leu
>WENV170802841
MDSW01020162
183628
Alphaproteobacteria
CCG
Arg
>WENV170810527
MDSW01150411
435083
Alphaproteobacteria
>WENV170807028
MDSW01091527
435083
Alphaproteobacteria
>WENV170809163
MDSW01127396
33571
Alphaproteobacteria
TGA
Ser
>WENV170811811
MDSW01173129
178503
Alphaproteobacteria
GGG
Pro
>WENV170810348
MDSW01147450
198858
Alphaproteobacteria
CAT
Met
>WENV170809833
MDSW01138737
419842
Alphaproteobacteria
GCC
Gly
>WENV170814344
MDSW01215162
419842
Alphaproteobacteria
GCC
Gly
>WENV170814461
MDSW01217557
419842
Alphaproteobacteria
GCC
Gly
>WENV170809754
MDSW01137605
281650
Alphaproteobacteria
CCA
Trp
>WENV170804230
MDSW01043925
282587
Alphaproteobacteria
>WENV170803780
MDSW01035568
453762
Alphaproteobacteria
CAC
Val
>WENV170803643
MDSW01033009
176490
Alphaproteobacteria
CAT
Met
>WENV170811847
MDSW01173814
212319
Alphaproteobacteria
GTG
His
>WENV170810693
MDSW01153494
212319
Alphaproteobacteria
GTG
His
>WENV170808286
MDSW01112471
212319
Alphaproteobacteria
GTG
His
>WENV170811228
MDSW01163047
400029
Alphaproteobacteria
GGT
Thr
>WENV170803025
MDSW01023472
488318
Alphaproteobacteria
TCC
Gly
>WENV170802749
MDSW01018924
398994
Alphaproteobacteria
GTT
Asn
>WENV170807333
MDSW01096889
398994
Alphaproteobacteria
GTT
Asn
>WENV170808374
MDSW01114033
398994
Alphaproteobacteria
GTT
Asn
>WENV170808891
MDSW01122733
398994
Alphaproteobacteria
GTT
Asn
>WENV170813640
MDSW01203901
398994
Alphaproteobacteria
GTT
Asn
>WENV170812128
MDSW01178149
350583
Alphaproteobacteria
TAC
Val
>WENV170810288
MDSW01146358
281676
Alphaproteobacteria
TAC
Val
>WENV170810840
MDSW01155911
354296
Alphaproteobacteria
TAC
Val
>WENV170808667
MDSW01118996
353624
Alphaproteobacteria
CCA
Trp
>WENV170812784
MDSW01189415
296763
Alphaproteobacteria
CCA
Trp
>WENV170807505
MDSW01099788
296763
Alphaproteobacteria
CCA
Trp
>WENV170807741
MDSW01103513
121990
Alphaproteobacteria
TAG
Leu
>WENV170810474
MDSW01149433
121990
Alphaproteobacteria
TAG
Leu
>WENV170811286
MDSW01164016
121990
Alphaproteobacteria
TAG
Leu
>WENV170803058
MDSW01024142
428327
Alphaproteobacteria
GCC
Gly
>WENV170812316
MDSW01181422
428327
Alphaproteobacteria
GCC
Gly
>WENV170814701
MDSW01221588
428327
Alphaproteobacteria
GCC
Gly
>WENV170810930
MDSW01157550
404182
Alphaproteobacteria
CAC
Val
>WENV170803002
MDSW01023210
84860
Alphaproteobacteria
CAG
Leu
>WENV170804643
MDSW01050979
398996
Alphaproteobacteria
GCC
Gly
>WENV170804644
MDSW01050979
398996
Alphaproteobacteria
GCC
Gly
>WENV170804785
MDSW01053029
308123
Alphaproteobacteria
CCA
Trp
>WENV170802972
MDSW01022685
308123
Alphaproteobacteria
CCA
Trp
>WENV170813487
MDSW01200897
195456
Alphaproteobacteria
CAT
Met
>WENV170811229
MDSW01163047
400693
Alphaproteobacteria
GCC
Gly
>WENV170804455
MDSW01047788
284796
Alphaproteobacteria
CGT
Thr
>WENV170807804
MDSW01104619
283257
Alphaproteobacteria
TTT
Lys
>WENV170813627
MDSW01203690
283257
Alphaproteobacteria
TTT
Lys
>WENV170802823
MDSW01020078
305449
Alphaproteobacteria
CGT
Thr
>WENV170812506
MDSW01184564
366050
Alphaproteobacteria
CGC
Ala
>WENV170813530
MDSW01201538
30763
Alphaproteobacteria
GGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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