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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170802723
MDSW01018528
284706
Gammaproteobacteria
GTT
Asn
>WENV170804087
MDSW01041138
284706
Gammaproteobacteria
GTT
Asn
>WENV170805149
MDSW01060054
284706
Gammaproteobacteria
GTT
Asn
>WENV170805767
MDSW01070380
284706
Gammaproteobacteria
GTT
Asn
>WENV170809300
MDSW01129478
158246
Gammaproteobacteria
GTC
Asp
>WENV170806118
MDSW01077021
363863
Gammaproteobacteria
CCA
Trp
>WENV170812866
MDSW01190443
209464
Gammaproteobacteria
CCG
Arg
>WENV170814305
MDSW01214499
179284
Gammaproteobacteria
CAT
Met
>WENV170812798
MDSW01189641
292194
Gammaproteobacteria
GGT
Thr
>WENV170804024
MDSW01040184
292194
Gammaproteobacteria
GGT
Thr
>WENV170803838
MDSW01036601
284693
Gammaproteobacteria
TTC
Glu
>WENV170812914
MDSW01191276
282550
Gammaproteobacteria
TAC
Val
>WENV170808842
MDSW01122066
451238
Gammaproteobacteria
GCC
Gly
>WENV170808534
MDSW01116407
451238
Gammaproteobacteria
GCC
Gly
>WENV170807033
MDSW01091590
451238
Gammaproteobacteria
GCC
Gly
>WENV170807422
MDSW01098315
178535
Gammaproteobacteria
CCT
Arg
>WENV170810861
MDSW01156305
351236
Gammaproteobacteria
TTT
Lys
>WENV170803385
MDSW01029342
351236
Gammaproteobacteria
TTT
Lys
>WENV170802020
MDSW01006166
351236
Gammaproteobacteria
TTT
Lys
>WENV170805163
MDSW01060156
480516
Gammaproteobacteria
GCA
Cys
>WENV170807458
MDSW01098995
480516
Gammaproteobacteria
GCA
Cys
>WENV170808012
MDSW01107911
350703
Gammaproteobacteria
TTT
Lys
>WENV170813691
MDSW01204735
338424
Gammaproteobacteria
TAC
Val
>WENV170805001
MDSW01057151
243308
Gammaproteobacteria
TGG
Pro
>WENV170813482
MDSW01200857
243308
Gammaproteobacteria
TGG
Pro
>WENV170805025
MDSW01057547
197498
Gammaproteobacteria
TGG
Pro
>WENV170805427
MDSW01064782
197498
Gammaproteobacteria
TGG
Pro
>WENV170803588
MDSW01032173
291402
Gammaproteobacteria
GTG
His
>WENV170811578
MDSW01169217
178169
Gammaproteobacteria
GAC
Val
>WENV170807355
MDSW01097171
306288
Gammaproteobacteria
GCC
Gly
>WENV170803617
MDSW01032681
242775
Gammaproteobacteria
TGG
Pro
>WENV170806518
MDSW01082967
242775
Gammaproteobacteria
TGG
Pro
>WENV170813522
MDSW01201497
287558
Gammaproteobacteria
TTC
Glu
>WENV170812539
MDSW01185334
334421
Gammaproteobacteria
TGT
Thr
>WENV170804655
MDSW01051272
346373
Gammaproteobacteria
GAA
Phe
>WENV170807306
MDSW01096387
346373
Gammaproteobacteria
GAA
Phe
>WENV170802172
MDSW01008994
177028
Gammaproteobacteria
CAT
Met
>WENV170808295
MDSW01112605
176301
Gammaproteobacteria
GAT
Ile
>WENV170806947
MDSW01090109
176301
Gammaproteobacteria
GAT
Ile
>WENV170810228
MDSW01145263
230011
Gammaproteobacteria
ACG
Arg
>WENV170802405
MDSW01012665
340790
Gammaproteobacteria
TGT
Thr
>WENV170806761
MDSW01086644
282018
Gammaproteobacteria
TGT
Thr
>WENV170806648
MDSW01084999
281939
Gammaproteobacteria
TTT
Lys
>WENV170809905
MDSW01140111
286691
Gammaproteobacteria
GTG
His
>WENV170805164
MDSW01060156
56109
Gammaproteobacteria
TAA
Leu
>WENV170808540
MDSW01116547
283486
Gammaproteobacteria
TGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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