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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV171003346
NNBT01005663
195199
Alphaproteobacteria
GTC
Asp
>WENV171003174
NNBT01002094
180177
Alphaproteobacteria
CCT
Arg
>WENV171003189
NNBT01002249
300472
Alphaproteobacteria
GAA
Phe
>WENV171003170
NNBT01002083
192328
Alphaproteobacteria
ACG
Arg
>WENV171003159
NNBT01001976
29571
Alphaproteobacteria
CGA
Ser
>WENV171003184
NNBT01002185
29671
Alphaproteobacteria
TGA
Ser
>WENV171003164
NNBT01002044
156091
Alphaproteobacteria
GGG
Pro
>WENV171003191
NNBT01002254
178327
Alphaproteobacteria
GTG
His
>WENV171003166
NNBT01002068
283066
Alphaproteobacteria
CAT
Met
>WENV171003158
NNBT01001971
398980
Alphaproteobacteria
GAC
Val
>WENV171003324
NNBT01004783
201760
Alphaproteobacteria
GAT
Ile
>WENV171003193
NNBT01002306
290520
Alphaproteobacteria
TAC
Val
>WENV171003314
NNBT01004371
282660
Alphaproteobacteria
CGC
Ala
>WENV171003179
NNBT01002165
400274
Alphaproteobacteria
TTT
Lys
>WENV171003182
NNBT01002185
178328
Alphaproteobacteria
TGG
Pro
>WENV171003135
NNBT01001758
289046
Alphaproteobacteria
TGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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