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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180407142
OBUQ01000483
406043
Verrucomicrobiota
GCA
Cys
>WENV180407131
OBUQ01000456
293125
Verrucomicrobiota
GAA
Phe
>WENV180407357
OBUQ01001484
406350
Verrucomicrobiota
TGT
Thr
>WENV180407286
OBUQ01000885
148006
Verrucomicrobiota
CAA
Leu
>WENV180407086
OBUQ01000347
293105
Verrucomicrobiota
CAT
Met
>WENV180407222
OBUQ01000714
405901
Verrucomicrobiota
GCC
Gly
>WENV180407083
OBUQ01000347
405901
Verrucomicrobiota
GCC
Gly
>WENV180407200
OBUQ01000615
483642
Verrucomicrobiota
CCC
Gly
>WENV180407326
OBUQ01001202
229220
Verrucomicrobiota
CAT
Met
>WENV180407339
OBUQ01001256
8960
Verrucomicrobiota
CGA
Ser
>WENV180407069
OBUQ01000319
101463
Verrucomicrobiota
TAA
Leu
>WENV180407117
OBUQ01000411
157427
Verrucomicrobiota
GTC
Asp
>WENV180407312
OBUQ01001059
293079
Verrucomicrobiota
CGC
Ala
>WENV180407167
OBUQ01000560
120352
Verrucomicrobiota
TAG
Leu
>WENV180407070
OBUQ01000319
292636
Verrucomicrobiota
>WENV180407338
OBUQ01001255
293069
Verrucomicrobiota
CTT
Lys
>WENV180407337
OBUQ01001255
293069
Verrucomicrobiota
CTT
Lys
>WENV180407184
OBUQ01000593
406336
Verrucomicrobiota
CCT
Arg
>WENV180407297
OBUQ01001033
406369
Verrucomicrobiota
CCG
Arg
>WENV180407313
OBUQ01001080
405940
Verrucomicrobiota
GGT
Thr
>WENV180407399
OBUQ01002214
406044
Verrucomicrobiota
CTG
Gln
>WENV180407216
OBUQ01000684
187556
Verrucomicrobiota
GGG
Pro
>WENV180407085
OBUQ01000347
406037
Verrucomicrobiota
GTG
His
>WENV180407341
OBUQ01001290
406360
Verrucomicrobiota
GAC
Val
>WENV180407287
OBUQ01000888
187548
Verrucomicrobiota
TCT
Arg
>WENV180407336
OBUQ01001255
406040
Verrucomicrobiota
CGT
Thr
>WENV180407209
OBUQ01000645
57652
Verrucomicrobiota
TGA
Ser
>WENV180407136
OBUQ01000473
406039
Verrucomicrobiota
CAC
Val
>WENV180407294
OBUQ01000961
75458
Verrucomicrobiota
CAG
Leu
>WENV180407351
OBUQ01001428
406368
Verrucomicrobiota
TTG
Gln
>WENV180407210
OBUQ01000646
101461
Verrucomicrobiota
GTA
Tyr
>WENV180407290
OBUQ01000923
293095
Verrucomicrobiota
TTT
Lys
>WENV180407242
OBUQ01000790
187561
Verrucomicrobiota
CGG
Pro
>WENV180407180
OBUQ01000586
406342
Verrucomicrobiota
CAT
Met
>WENV180407091
OBUQ01000368
406351
Verrucomicrobiota
GTT
Asn
>WENV180407253
OBUQ01000811
406346
Verrucomicrobiota
TAC
Val
>WENV180407362
OBUQ01001559
8938
Verrucomicrobiota
GCT
Ser
>WENV180407132
OBUQ01000456
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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