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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV181563219
OGJG01008163
109178
Gammaproteobacteria
CAA
Leu
>WENV181563351
OGJG01021309
86464
Gammaproteobacteria
TAA
Leu
>WENV181563360
OGJG01021983
176044
Gammaproteobacteria
GAC
Val
>WENV181563361
OGJG01021983
176044
Gammaproteobacteria
GAC
Val
>WENV181563389
OGJG01028951
400836
Gammaproteobacteria
TTG
Gln
>WENV181563319
OGJG01017703
5699
Gammaproteobacteria
GCT
Ser
>WENV181563344
OGJG01020455
180042
Gammaproteobacteria
TGG
Pro
>WENV181563327
OGJG01018307
56092
Gammaproteobacteria
TGA
Ser
>WENV181563408
OGJG01032086
280672
Gammaproteobacteria
GGT
Thr
>WENV181563271
OGJG01011526
176041
Gammaproteobacteria
CGG
Pro
>WENV181563333
OGJG01018838
99863
Gammaproteobacteria
CAG
Leu
>WENV181563371
OGJG01025663
233649
Gammaproteobacteria
TCT
Arg
>WENV181563176
OGJG01004757
31109
Gammaproteobacteria
GGA
Ser
>WENV181563097
OGJG01002218
401175
Gammaproteobacteria
TTG
Gln
>WENV181563290
OGJG01013370
293263
Gammaproteobacteria
CTT
Lys
>WENV181563374
OGJG01026613
8505
Gammaproteobacteria
GCT
Ser
>WENV181563359
OGJG01021983
176043
Gammaproteobacteria
GAC
Val
>WENV181563388
OGJG01028951
176035
Gammaproteobacteria
CAT
Met
>WENV181563471
OGJG01048749
178024
Gammaproteobacteria
CAT
Met
>WENV181563375
OGJG01026613
176039
Gammaproteobacteria
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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