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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV181894676
OGXR01000647
406043
Verrucomicrobiota
GCA
Cys
>WENV181894671
OGXR01000630
293125
Verrucomicrobiota
GAA
Phe
>WENV181895597
OGXR01015850
406350
Verrucomicrobiota
TGT
Thr
>WENV181894435
OGXR01000086
148006
Verrucomicrobiota
CAA
Leu
>WENV181894462
OGXR01000134
101600
Verrucomicrobiota
AAG
Leu
>WENV181895032
OGXR01002624
293105
Verrucomicrobiota
CAT
Met
>WENV181894599
OGXR01000452
405901
Verrucomicrobiota
GCC
Gly
>WENV181894355
OGXR01000024
405901
Verrucomicrobiota
GCC
Gly
>WENV181894652
OGXR01000568
483642
Verrucomicrobiota
CCC
Gly
>WENV181894849
OGXR01001535
229220
Verrucomicrobiota
CAT
Met
>WENV181894410
OGXR01000070
8960
Verrucomicrobiota
CGA
Ser
>WENV181894436
OGXR01000086
101463
Verrucomicrobiota
TAA
Leu
>WENV181894560
OGXR01000364
157427
Verrucomicrobiota
GTC
Asp
>WENV181894518
OGXR01000247
157427
Verrucomicrobiota
GTC
Asp
>WENV181894489
OGXR01000189
293079
Verrucomicrobiota
CGC
Ala
>WENV181894521
OGXR01000251
120352
Verrucomicrobiota
TAG
Leu
>WENV181894437
OGXR01000086
292636
Verrucomicrobiota
>WENV181894677
OGXR01000647
298263
Verrucomicrobiota
TTC
Glu
>WENV181894428
OGXR01000080
293069
Verrucomicrobiota
CTT
Lys
>WENV181894520
OGXR01000251
406336
Verrucomicrobiota
CCT
Arg
>WENV181894412
OGXR01000075
406369
Verrucomicrobiota
CCG
Arg
>WENV181894351
OGXR01000022
405940
Verrucomicrobiota
GGT
Thr
>WENV181894600
OGXR01000471
406044
Verrucomicrobiota
CTG
Gln
>WENV181894926
OGXR01001955
187556
Verrucomicrobiota
GGG
Pro
>WENV181895031
OGXR01002624
406037
Verrucomicrobiota
GTG
His
>WENV181895035
OGXR01002642
406360
Verrucomicrobiota
GAC
Val
>WENV181894315
OGXR01000008
187548
Verrucomicrobiota
TCT
Arg
>WENV181894427
OGXR01000080
406040
Verrucomicrobiota
CGT
Thr
>WENV181894354
OGXR01000024
57652
Verrucomicrobiota
TGA
Ser
>WENV181894313
OGXR01000006
406039
Verrucomicrobiota
CAC
Val
>WENV181894805
OGXR01001295
75458
Verrucomicrobiota
CAG
Leu
>WENV181894692
OGXR01000704
406368
Verrucomicrobiota
TTG
Gln
>WENV181894866
OGXR01001665
21159
Verrucomicrobiota
GGA
Ser
>WENV181894343
OGXR01000017
101461
Verrucomicrobiota
GTA
Tyr
>WENV181894380
OGXR01000043
293095
Verrucomicrobiota
TTT
Lys
>WENV181894429
OGXR01000080
187561
Verrucomicrobiota
CGG
Pro
>WENV181894356
OGXR01000024
406342
Verrucomicrobiota
CAT
Met
>WENV181894342
OGXR01000017
406351
Verrucomicrobiota
GTT
Asn
>WENV181895428
OGXR01009087
303305
Verrucomicrobiota
GGC
Ala
>WENV181894653
OGXR01000568
507474
Verrucomicrobiota
TCC
Gly
>WENV181894450
OGXR01000113
406346
Verrucomicrobiota
TAC
Val
>WENV181894438
OGXR01000086
8938
Verrucomicrobiota
GCT
Ser
>WENV181894672
OGXR01000630
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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