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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV182072098
OHFM01008673
406043
Verrucomicrobiota
GCA
Cys
>WENV182071955
OHFM01002999
293125
Verrucomicrobiota
GAA
Phe
>WENV182071821
OHFM01000992
406350
Verrucomicrobiota
TGT
Thr
>WENV182071691
OHFM01000310
148006
Verrucomicrobiota
CAA
Leu
>WENV182071636
OHFM01000166
101600
Verrucomicrobiota
AAG
Leu
>WENV182071728
OHFM01000470
293105
Verrucomicrobiota
CAT
Met
>WENV182071715
OHFM01000411
405901
Verrucomicrobiota
GCC
Gly
>WENV182071767
OHFM01000642
483642
Verrucomicrobiota
CCC
Gly
>WENV182071824
OHFM01001064
229220
Verrucomicrobiota
CAT
Met
>WENV182071741
OHFM01000527
101463
Verrucomicrobiota
TAA
Leu
>WENV182071843
OHFM01001327
157427
Verrucomicrobiota
GTC
Asp
>WENV182072086
OHFM01008212
293079
Verrucomicrobiota
CGC
Ala
>WENV182071742
OHFM01000527
292636
Verrucomicrobiota
>WENV182072099
OHFM01008673
298263
Verrucomicrobiota
TTC
Glu
>WENV182071726
OHFM01000470
298263
Verrucomicrobiota
TTC
Glu
>WENV182071927
OHFM01002192
293069
Verrucomicrobiota
CTT
Lys
>WENV182071814
OHFM01000905
406336
Verrucomicrobiota
CCT
Arg
>WENV182071660
OHFM01000239
406369
Verrucomicrobiota
CCG
Arg
>WENV182071850
OHFM01001372
405940
Verrucomicrobiota
GGT
Thr
>WENV182071899
OHFM01001651
406044
Verrucomicrobiota
CTG
Gln
>WENV182071727
OHFM01000470
406037
Verrucomicrobiota
GTG
His
>WENV182071746
OHFM01000582
406360
Verrucomicrobiota
GAC
Val
>WENV182071651
OHFM01000198
187548
Verrucomicrobiota
TCT
Arg
>WENV182071926
OHFM01002192
406040
Verrucomicrobiota
CGT
Thr
>WENV182072308
OHFM01026505
57652
Verrucomicrobiota
TGA
Ser
>WENV182072309
OHFM01026571
406039
Verrucomicrobiota
CAC
Val
>WENV182071830
OHFM01001116
75458
Verrucomicrobiota
CAG
Leu
>WENV182071947
OHFM01002741
406368
Verrucomicrobiota
TTG
Gln
>WENV182071684
OHFM01000299
21159
Verrucomicrobiota
GGA
Ser
>WENV182071807
OHFM01000878
101461
Verrucomicrobiota
GTA
Tyr
>WENV182071718
OHFM01000425
293095
Verrucomicrobiota
TTT
Lys
>WENV182071674
OHFM01000271
187561
Verrucomicrobiota
CGG
Pro
>WENV182071863
OHFM01001462
406342
Verrucomicrobiota
CAT
Met
>WENV182071773
OHFM01000688
406351
Verrucomicrobiota
GTT
Asn
>WENV182071745
OHFM01000580
303305
Verrucomicrobiota
GGC
Ala
>WENV182071768
OHFM01000642
507474
Verrucomicrobiota
TCC
Gly
>WENV182071776
OHFM01000695
406346
Verrucomicrobiota
TAC
Val
>WENV182071716
OHFM01000424
8938
Verrucomicrobiota
GCT
Ser
>WENV182071956
OHFM01002999
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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