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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1002314
SRR001308.371072
121190
Betaproteobacteria
CAA
Leu
>SRA1002169
SRR001308.282555
282941
Betaproteobacteria
TGT
Thr
>SRA1002311
SRR001308.369796
481266
Betaproteobacteria
GCA
Cys
>SRA1001960
SRR001308.149161
481266
Betaproteobacteria
GCA
Cys
>SRA1001766
SRR001308.41882
481266
Betaproteobacteria
GCA
Cys
>SRA1002179
SRR001308.290020
185257
Betaproteobacteria
CAT
Met
>SRA1001946
SRR001308.143819
281524
Betaproteobacteria
GAA
Phe
>SRA1002320
SRR001308.373101
180176
Betaproteobacteria
CAT
Met
>SRA1002236
SRR001308.322908
178981
Betaproteobacteria
CAT
Met
>SRA1001698
SRR001308.2192
282943
Betaproteobacteria
CTT
Lys
>SRA1001831
SRR001308.77886
400814
Betaproteobacteria
CAC
Val
>SRA1001844
SRR001308.87005
283193
Betaproteobacteria
CCA
Trp
>SRA1001813
SRR001308.68098
20385
Betaproteobacteria
GGA
Ser
>SRA1001770
SRR001308.44632
193851
Betaproteobacteria
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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