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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003885
SRR002328.7891
227519
Betaproteobacteria
TTG
Gln
>SRA1004304
SRR002328.258734
197278
Betaproteobacteria
CAT
Met
>SRA1004238
SRR002328.216529
197278
Betaproteobacteria
CAT
Met
>SRA1004189
SRR002328.190446
197278
Betaproteobacteria
CAT
Met
>SRA1003262
SRR002326.349191
197278
Betaproteobacteria
CAT
Met
>SRA1004158
SRR002328.176774
198132
Betaproteobacteria
CAT
Met
>SRA1004033
SRR002328.105765
198132
Betaproteobacteria
CAT
Met
>SRA1003968
SRR002328.63250
290590
Betaproteobacteria
TAC
Val
>SRA1003125
SRR002326.223351
290590
Betaproteobacteria
TAC
Val
>SRA1003100
SRR002326.199565
290590
Betaproteobacteria
TAC
Val
>SRA1004149
SRR002328.172717
281431
Betaproteobacteria
GTT
Asn
>SRA1004019
SRR002328.98486
281431
Betaproteobacteria
GTT
Asn
>SRA1004018
SRR002328.98486
281431
Betaproteobacteria
GTT
Asn
>SRA1003969
SRR002328.65499
281431
Betaproteobacteria
GTT
Asn
>SRA1003654
SRR002327.98037
281431
Betaproteobacteria
GTT
Asn
>SRA1003624
SRR002327.71906
281431
Betaproteobacteria
GTT
Asn
>SRA1003623
SRR002327.71906
281431
Betaproteobacteria
GTT
Asn
>SRA1003165
SRR002326.264531
281431
Betaproteobacteria
GTT
Asn
>SRA1003075
SRR002326.183360
281431
Betaproteobacteria
GTT
Asn
>SRA1003037
SRR002326.165342
281431
Betaproteobacteria
GTT
Asn
>SRA1004042
SRR002328.112103
307931
Betaproteobacteria
TTC
Glu
>SRA1003959
SRR002328.58849
307931
Betaproteobacteria
TTC
Glu
>SRA1003822
SRR002327.210811
307931
Betaproteobacteria
TTC
Glu
>SRA1003766
SRR002327.170224
307931
Betaproteobacteria
TTC
Glu
>SRA1003681
SRR002327.118747
307931
Betaproteobacteria
TTC
Glu
>SRA1002976
SRR002326.131361
307931
Betaproteobacteria
TTC
Glu
>SRA1004213
SRR002328.203574
483989
Betaproteobacteria
>SRA1002811
SRR002326.31606
483989
Betaproteobacteria
>SRA1004137
SRR002328.167224
284821
Betaproteobacteria
TTT
Lys
>SRA1003998
SRR002328.89399
284821
Betaproteobacteria
TTT
Lys
>SRA1003733
SRR002327.150608
284821
Betaproteobacteria
TTT
Lys
>SRA1002785
SRR002326.12879
284821
Betaproteobacteria
TTT
Lys
>SRA1003934
SRR002328.47373
293769
Betaproteobacteria
GCC
Gly
>SRA1004318
SRR002328.273095
211214
Betaproteobacteria
CAT
Met
>SRA1004240
SRR002328.217425
211214
Betaproteobacteria
CAT
Met
>SRA1004202
SRR002328.195622
120253
Betaproteobacteria
CAG
Leu
>SRA1004011
SRR002328.95622
120253
Betaproteobacteria
CAG
Leu
>SRA1003976
SRR002328.68302
340615
Betaproteobacteria
TGC
Ala
>SRA1002796
SRR002326.22042
281681
Betaproteobacteria
TTT
Lys
>SRA1003412
SRR002326.451314
118123
Betaproteobacteria
CAG
Leu
>SRA1003348
SRR002326.405318
282941
Betaproteobacteria
TGT
Thr
>SRA1003706
SRR002327.135576
56360
Betaproteobacteria
CGA
Ser
>SRA1003061
SRR002326.176551
56360
Betaproteobacteria
CGA
Ser
>SRA1003772
SRR002327.174806
414048
Betaproteobacteria
GGT
Thr
>SRA1003736
SRR002327.151820
414048
Betaproteobacteria
GGT
Thr
>SRA1003731
SRR002327.148110
414048
Betaproteobacteria
GGT
Thr
>SRA1003720
SRR002327.144374
414048
Betaproteobacteria
GGT
Thr
>SRA1003147
SRR002326.243107
414048
Betaproteobacteria
GGT
Thr
>SRA1002967
SRR002326.128769
414048
Betaproteobacteria
GGT
Thr
>SRA1002788
SRR002326.17290
281308
Betaproteobacteria
GAT
Ile
>SRA1003127
SRR002326.226836
188039
Betaproteobacteria
TCT
Arg
>SRA1003502
SRR002326.510757
282942
Betaproteobacteria
CCG
Arg
>SRA1003323
SRR002326.390184
282942
Betaproteobacteria
CCG
Arg
>SRA1003294
SRR002326.370320
282942
Betaproteobacteria
CCG
Arg
>SRA1003290
SRR002326.368462
282942
Betaproteobacteria
CCG
Arg
>SRA1003284
SRR002326.365840
282942
Betaproteobacteria
CCG
Arg
>SRA1003086
SRR002326.188858
282942
Betaproteobacteria
CCG
Arg
>SRA1002902
SRR002326.87648
282942
Betaproteobacteria
CCG
Arg
>SRA1003445
SRR002326.473478
283003
Betaproteobacteria
CCG
Arg
>SRA1002974
SRR002326.130860
283003
Betaproteobacteria
CCG
Arg
>SRA1003778
SRR002327.180594
481454
Betaproteobacteria
GCA
Cys
>SRA1003618
SRR002327.69569
283940
Betaproteobacteria
TTC
Glu
>SRA1003814
SRR002327.200828
127222
Betaproteobacteria
CAG
Leu
>SRA1003630
SRR002327.76046
187036
Betaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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