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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1015559
SRR023846.111361
328657
Betaproteobacteria
TAC
Val
>SRA1014426
SRR023845.134149
328657
Betaproteobacteria
TAC
Val
>SRA1016090
SRR023846.343338
281431
Betaproteobacteria
GTT
Asn
>SRA1015335
SRR023846.21796
281431
Betaproteobacteria
GTT
Asn
>SRA1014712
SRR023845.275043
281431
Betaproteobacteria
GTT
Asn
>SRA1014715
SRR023845.277468
483989
Betaproteobacteria
>SRA1015269
SRR023845.532369
212101
Betaproteobacteria
GAT
Ile
>SRA1015209
SRR023845.499990
212101
Betaproteobacteria
GAT
Ile
>SRA1015110
SRR023845.464124
212101
Betaproteobacteria
GAT
Ile
>SRA1015051
SRR023845.436772
212101
Betaproteobacteria
GAT
Ile
>SRA1014870
SRR023845.354694
212101
Betaproteobacteria
GAT
Ile
>SRA1014438
SRR023845.143697
212101
Betaproteobacteria
GAT
Ile
>SRA1016148
SRR023846.369740
284821
Betaproteobacteria
TTT
Lys
>SRA1015029
SRR023845.426223
284821
Betaproteobacteria
TTT
Lys
>SRA1014425
SRR023845.134073
284821
Betaproteobacteria
TTT
Lys
>SRA1016495
SRR023846.530639
118157
Betaproteobacteria
GAG
Leu
>SRA1016032
SRR023846.317459
118157
Betaproteobacteria
GAG
Leu
>SRA1014225
SRR023845.45359
118157
Betaproteobacteria
GAG
Leu
>SRA1016263
SRR023846.427371
60914
Betaproteobacteria
TGA
Ser
>SRA1014665
SRR023845.250515
60914
Betaproteobacteria
TGA
Ser
>SRA1014380
SRR023845.114661
283006
Betaproteobacteria
GCC
Gly
>SRA1015034
SRR023845.428102
56355
Betaproteobacteria
TGA
Ser
>SRA1016494
SRR023846.529544
20385
Betaproteobacteria
GGA
Ser
>SRA1015238
SRR023845.514416
20385
Betaproteobacteria
GGA
Ser
>SRA1015035
SRR023845.428195
20385
Betaproteobacteria
GGA
Ser
>SRA1014190
SRR023845.33418
20385
Betaproteobacteria
GGA
Ser
>SRA1015975
SRR023846.291949
178289
Betaproteobacteria
TTG
Gln
>SRA1015232
SRR023845.510772
178289
Betaproteobacteria
TTG
Gln
>SRA1015363
SRR023846.30547
480973
Betaproteobacteria
GCA
Cys
>SRA1016109
SRR023846.351260
120449
Betaproteobacteria
CAA
Leu
>SRA1016503
SRR023846.534704
118123
Betaproteobacteria
CAG
Leu
>SRA1015552
SRR023846.108504
118123
Betaproteobacteria
CAG
Leu
>SRA1016030
SRR023846.316906
127222
Betaproteobacteria
CAG
Leu
>SRA1016175
SRR023846.380322
178217
Betaproteobacteria
TTG
Gln
>SRA1016391
SRR023846.477627
282942
Betaproteobacteria
CCG
Arg
>SRA1015914
SRR023846.259194
282942
Betaproteobacteria
CCG
Arg
>SRA1015773
SRR023846.193359
282942
Betaproteobacteria
CCG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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