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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1015248
SRR023845.519296
194687
Gammaproteobacteria
GTC
Asp
>SRA1014567
SRR023845.203139
398941
Gammaproteobacteria
CTC
Glu
>SRA1014828
SRR023845.332947
480919
Gammaproteobacteria
CTG
Gln
>SRA1014255
SRR023845.60319
401696
Gammaproteobacteria
TTG
Gln
>SRA1015204
SRR023845.498016
56358
Gammaproteobacteria
TGA
Ser
>SRA1015256
SRR023845.522697
73819
Gammaproteobacteria
CAG
Leu
>SRA1015010
SRR023845.421798
73819
Gammaproteobacteria
CAG
Leu
>SRA1014899
SRR023845.370052
73819
Gammaproteobacteria
CAG
Leu
>SRA1014690
SRR023845.264894
400950
Gammaproteobacteria
CCT
Arg
>SRA1014256
SRR023845.61047
319467
Gammaproteobacteria
TGT
Thr
>SRA1015100
SRR023845.461135
289050
Gammaproteobacteria
CCA
Trp
>SRA1016332
SRR023846.456278
176057
Gammaproteobacteria
GTG
His
>SRA1015826
SRR023846.216017
176057
Gammaproteobacteria
GTG
His
>SRA1016551
SRR023846.560576
366335
Gammaproteobacteria
GGC
Ala
>SRA1016413
SRR023846.487084
117901
Gammaproteobacteria
GTA
Tyr
>SRA1015598
SRR023846.127961
117931
Gammaproteobacteria
CAA
Leu
>SRA1016187
SRR023846.389028
32543
Gammaproteobacteria
CGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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