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tRNADB-CE

: tRNA gene database curated manually by experts


Takashi Abe1, Toshimichi Ikemura1, Junichi Sugahara2, Akio Kanai2, Yasuo Ohara1, Hiroshi Uehara1, Makoto Kinouchi3,


Shigehiko Kanaya4, Yuko Yamada1, Akira Muto5, Hachiro Inokuchi1


1. Nagahama Inst. of Bio-Sci. and Tech., 2. Keio Univ., 3. Yamagata Univ., 4. NAIST, 5. Hirosaki Univ.

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Advanced Pattern Search

Structure Target Position Sequence

[Click on image to enlarge]

Numbering of nucleotides in tRNAs.
(Sprinzl et al. Nucleic Acids Res., 26, 148-153, 1998)
[PubMed Central] 		1. Upstream sequence (10 nucleotides)
2. Acceptor-stem (nucleotide position 1-7)
3. Nucleotide position 8-9
4. D-stem (nucleotide position 10-13)
5. D-loop (nucleotide position 14-21)
6. D-stem (nucleotide position 22-25)
7. Nucleotide position 26
8. Anticodon-stem (nucleotide position 27-31)
9. Anticodon-loop (nucleotide position 32-38)
10. Anticodon-stem (nucleotide position 39-43)
11. Variable-loop (nucleotide position 44-48)
12. T-stem (nucleotide position 49-53)
13. T-loop (nucleotide position 54-60)
14. T-stem (nucleotide position 61-65)
15. Acceptor-stem (nucleotide position 66-72)
16. Nucleotide position 73-76
17. Downstream sequence (10 nucleotides)
Base Size 2. & 15. Acceptor-stem base size 7nt 8nt both
Search Type and or
Data Types Complete Genome - Bacteria
Complete Genome - Archaea
Draft (WGS)
Plant
Fungi
Virus
Phage
Plasmid
Chloroplast
ENV
SRA

BACK

tRNADB-CE was supported by Integrated Database Project
from the Ministry of Education, Culture, Sports,
Science and Technology, Japan.

Bioinformatics Laboratory, Information Engineering, Niigata University.
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