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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Anticodon table
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
2
GGA
3
GTA
6
GCA
4
C
Leu
TAA
2
TGA
2
ochre
TTA
0
opal Sec
TCA
0
A
CAA
2
CGA
2
amber
CTA
0
Trp
CCA
3
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
4
T
GAG
2
GGG
5
GTG
7
GCG
0
C
TAG
4
TGG
2
Gln
TTG
5
TCG
0
A
CAG
2
CGG
5
CTG
0
CCG
3
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
5
GGT
6
GTT
12
GCT
2
C
TAT
0
TGT
5
Lys
TTT
2
Arg
TCT
4
A
Met
CAT
8
CGT
4
CTT
4
CCT
0
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
6
GGC
2
GTC
3
GCC
6
C
TAC
5
TGC
4
Glu
TTC
0
TCC
4
A
CAC
4
CGC
3
CTC
0
CCC
3
G
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