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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[AMCI] gut metagenome; fecal sample from gut
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
17
GGA
11
GTA
24
GCA
9
C
Leu
TAA
10
TGA
17
ochre
TTA
0
opal Sec
TCA
0
A
CAA
8
CGA
3
amber
CTA
0
Trp
CCA
11
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
7
T
GAG
6
GGG
7
GTG
8
GCG
0
C
TAG
9
TGG
12
Gln
TTG
9
TCG
0
A
CAG
8
CGG
8
CTG
6
CCG
3
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
18
GGT
8
GTT
17
GCT
10
C
TAT
0
TGT
20
Lys
TTT
17
Arg
TCT
9
A
Met
CAT
32
CGT
5
CTT
14
CCT
8
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
0
GGC
7
GTC
22
GCC
20
C
TAC
19
TGC
18
Glu
TTC
19
TCC
8
A
CAC
1
CGC
0
CTC
7
CCC
6
G
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