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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Anticodon table
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
4
GGA
1
GTA
2
GCA
3
C
Leu
TAA
2
TGA
2
ochre
TTA
0
opal Sec
TCA
0
A
CAA
1
CGA
2
amber
CTA
0
Trp
CCA
2
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
2
T
GAG
1
GGG
2
GTG
3
GCG
0
C
TAG
4
TGG
2
Gln
TTG
4
TCG
0
A
CAG
2
CGG
0
CTG
1
CCG
2
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
3
GGT
2
GTT
2
GCT
0
C
TAT
0
TGT
2
Lys
TTT
3
Arg
TCT
3
A
Met
CAT
6
CGT
1
CTT
0
CCT
1
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
3
GGC
3
GTC
2
GCC
4
C
TAC
2
TGC
4
Glu
TTC
4
TCC
2
A
CAC
0
CGC
0
CTC
0
CCC
2
G
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